PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR73644.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 530aa MW: 58051 Da PI: 9.1933

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR73644.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H RWR73644.1 77 FVCEICNKGFQRDQNLQLHRRGH 99 89*******************88 PP
2	zf-C2H2	13.1	0.00028	153	175	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ RWR73644.1 153 WKCHKCSKRYAVQSDWKAHSKTC 175 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence
MMNSLAIQQH PAVDVNMSNL TSASGEASAS SGSIYQQSFA TPNPTTMKKK RNLPGNPDPD 60 AEVIALSPKS LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTN KEVRKRVYIC 120 PEPSCVHHDP SRALGDLTGI KKHFSRKHGE KKWKCHKCSK RYAVQSDWKA HSKTCGTREY 180 RCDCGTLFSR RDSFITHRAF CDALAEESAR AIPENPITNP LVSSKASTST SHGPSTNINL 240 QTQFPHLLNT PEQNSHSNNI NAPEFQGLTL KREQQEQHQF LRPEVPPWLA LVGAGPGPPT 300 QTPIPHLHLP SPVFSTRIEN EFSQSQDPMP NNNHSLLPAF HPTPPHMSAT ALLQKAAQMG 360 ASMSRPSSSS MFRLHQGHMT GNATASSSAT TGFGMGQSSR EEMESSLVHG LTTFGNKADV 420 LLDHTPPTSA SLLQNMMTSL SSGTGFDGSF DEAFGGLLGL KREENGGENP AKTRHRKQEG 480 GSGGGNDGLT RDFLGLRAFS HRDILNMAGL DPCLNSSSNE QTPNQKSWQG

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence

MMNSLAIQQH PAVDVNMSNL TSASGEASAS SGSIYQQSFA TPNPTTMKKK RNLPGNPDPD  60
AEVIALSPKS LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTN KEVRKRVYIC  120
PEPSCVHHDP SRALGDLTGI KKHFSRKHGE KKWKCHKCSK RYAVQSDWKA HSKTCGTREY  180
RCDCGTLFSR RDSFITHRAF CDALAEESAR AIPENPITNP LVSSKASTST SHGPSTNINL  240
QTQFPHLLNT PEQNSHSNNI NAPEFQGLTL KREQQEQHQF LRPEVPPWLA LVGAGPGPPT  300
QTPIPHLHLP SPVFSTRIEN EFSQSQDPMP NNNHSLLPAF HPTPPHMSAT ALLQKAAQMG  360
ASMSRPSSSS MFRLHQGHMT GNATASSSAT TGFGMGQSSR EEMESSLVHG LTTFGNKADV  420
LLDHTPPTSA SLLQNMMTSL SSGTGFDGSF DEAFGGLLGL KREENGGENP AKTRHRKQEG  480
GSGGGNDGLT RDFLGLRAFS HRDILNMAGL DPCLNSSSNE QTPNQKSWQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	1e-124	C2H2 family protein