PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR73800.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 471aa MW: 51898.9 Da PI: 6.3248

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR73800.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.3e-12	399	444	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +AveYIk+Lq RWR73800.1 399 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKKLQ 444 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MHDSQALPNG LNHTFSTTCK PAKEELQENR EAMNSDIQKQ QQQQQQQMNR GLIRFRSAPS 60 SLLENLIDGG EGSDGFLPQS SNPEAETMFS GFNFPQDSVS PNIREIDDKG MVSQRSPQLR 120 AIEHEEVVVP QHDRFSSTWP LDLQMEQLPN RSSQNGAAID SSFRVMNSMA IDSQQVKSGS 180 NCANLIRHSS SPAGLFSNLN VENGNVVMRG MGNVRAGNVS NAEAASTSRL RNQTNFISRQ 240 TSSSGLLSKI SVMGAENIAS RIAEDGSLVN ANNGGSRGFV PGYPISSWDD MPLGDNSTGL 300 KRLRDDNSKM TSSLNRSDTL VMLETDHLDF SSVFCLSDLL GNLVYQNGEL GYRTTGLSHQ 360 LSFPMSSLEM DAMEQILQFQ DSVPCKIRAK RGCATHPRSI AERVRRTRIS ERMRKLQELV 420 PNMDKQTNTA DMLDLAVEYI KKLQSEAKTL KDSQATCACS SKQQPNPNPA V

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MHDSQALPNG LNHTFSTTCK PAKEELQENR EAMNSDIQKQ QQQQQQQMNR GLIRFRSAPS  60
SLLENLIDGG EGSDGFLPQS SNPEAETMFS GFNFPQDSVS PNIREIDDKG MVSQRSPQLR  120
AIEHEEVVVP QHDRFSSTWP LDLQMEQLPN RSSQNGAAID SSFRVMNSMA IDSQQVKSGS  180
NCANLIRHSS SPAGLFSNLN VENGNVVMRG MGNVRAGNVS NAEAASTSRL RNQTNFISRQ  240
TSSSGLLSKI SVMGAENIAS RIAEDGSLVN ANNGGSRGFV PGYPISSWDD MPLGDNSTGL  300
KRLRDDNSKM TSSLNRSDTL VMLETDHLDF SSVFCLSDLL GNLVYQNGEL GYRTTGLSHQ  360
LSFPMSSLEM DAMEQILQFQ DSVPCKIRAK RGCATHPRSI AERVRRTRIS ERMRKLQELV  420
PNMDKQTNTA DMLDLAVEYI KKLQSEAKTL KDSQATCACS SKQQPNPNPA V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-64	bHLH family protein