PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR73821.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family C3H
Protein Properties Length: 298aa    MW: 31270.8 Da    PI: 9.9384
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR73821.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.31.3e-08105130227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 kt+ C+ +     Ck+Gd+C+FaHg+
  RWR73821.1 105 KTRMCNKYNTAEGCKFGDKCHFAHGE 130
                 89**********************96 PP
2zf-CCCH35.71.4e-11265289126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC +fa+ G C +G+rC+FaHg
  RWR73821.1 265 FKTKLCENFAK-GSCTFGERCHFAHG 289
                 69*********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
MDLARKRRPD SAMNGNGGAM GTKKFKQESD SFPTGIGSKS KPCTKFFSTA GCPFGEGCHF  60
LHYVPGGINA VAHMTNLGNP ALPPVSRIPV APPAISNGPS PPLVKTRMCN KYNTAEGCKF  120
GDKCHFAHGE RELGRPTVPS HEDRPMAPMT GRLAGRIEPP PPGLAAAASF GASATAKISV  180
DASLAGAIIG KAGVNSKQIC RVTGAKLSIR EHETDPNLRN IELEGTFDQI KQASAMVREL  240
IVNIGNAAGP VKNTAAAPVA PANNFKTKLC ENFAKGSCTF GERCHFAHGA NELRKTGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.19e-51C3H family protein