PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR73991.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 232aa    MW: 25682.7 Da    PI: 8.224
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR73991.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.71.5e-231563149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k+ien+  rqv fskRr+g++KKA+EL++LC+ae+a+i+fs+ gk + +
  RWR73991.1 15 KKIENEDSRQVCFSKRRAGLFKKASELCILCGAEIAIIVFSPAGKAFSF 63
                68******************************************97766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MVRKPSMGRQ KIEIKKIENE DSRQVCFSKR RAGLFKKASE LCILCGAEIA IIVFSPAGKA  60
FSFGHPCVDS VVNRFLGTPN PTTALMDVSY SSFHRAAAVQ ELNRQHTELL QQVEEEKKKG  120
DSLKRKDGRP GFWWEAPVED MELQDLEKYK ACMEELRKKV ANRVDYLMMA GMTFPATGHF  180
GGVNSVGAAF DPFMPGSSDS LLPPLPPALL PPLPPALPHP VDQSIGFGPH LF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-48M-type_MADS family protein