PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR74042.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 442aa MW: 49627.3 Da PI: 7.1464

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR74042.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.2	2.5e-12	265	312	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k+Lq RWR74042.1 265 QDHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKQLQ 312 5699**********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MRSLEYLASQ RTLSPYKGFS WSFVIVASLF LSSLFWLLIY EFCVFGGWNC NGCWVLLKHL 60 EHHEHPNISR NPLKQAALME MSSVRWLSEL GMEDPTFIQQ CDMNSLDQFT TQQIAAALGE 120 EFQHSFSSES YSSYPHITPR SNNNITCSSM EASQQGADRP MKQHRTNSWN SCTTEHVSTP 180 DASPPNLLSF GNQNSPTNQQ QFYSNLIAGA AAKPKDESLS PRTSNIPTDI LISQSSFLNQ 240 GYVSKAGQGA KRVNMGTARP PSHTQDHIIA ERKRREKLSQ RFIALSAIVP GLKKMDKASV 300 LGDAIKYVKQ LQDKVKTMEE QTLKKTVESV VFIKKSQLCG DDDLSSSDEN FDGHSDEPLP 360 EIEARVSEKN ILIRVHCEKR KGTLVKALDE IEKLHLSIVN TSVIPFANSA LDITVTAQME 420 EEFCMTTKDL VKNLRSAFSK FM

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MRSLEYLASQ RTLSPYKGFS WSFVIVASLF LSSLFWLLIY EFCVFGGWNC NGCWVLLKHL  60
EHHEHPNISR NPLKQAALME MSSVRWLSEL GMEDPTFIQQ CDMNSLDQFT TQQIAAALGE  120
EFQHSFSSES YSSYPHITPR SNNNITCSSM EASQQGADRP MKQHRTNSWN SCTTEHVSTP  180
DASPPNLLSF GNQNSPTNQQ QFYSNLIAGA AAKPKDESLS PRTSNIPTDI LISQSSFLNQ  240
GYVSKAGQGA KRVNMGTARP PSHTQDHIIA ERKRREKLSQ RFIALSAIVP GLKKMDKASV  300
LGDAIKYVKQ LQDKVKTMEE QTLKKTVESV VFIKKSQLCG DDDLSSSDEN FDGHSDEPLP  360
EIEARVSEKN ILIRVHCEKR KGTLVKALDE IEKLHLSIVN TSVIPFANSA LDITVTAQME  420
EEFCMTTKDL VKNLRSAFSK FM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	271	276	ERKRRE
2	272	277	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-64	bHLH family protein