PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR74081.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 227aa    MW: 25157.8 Da    PI: 10.5593
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR74081.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF871e-27162211251
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev +iifsstgkly+++s
  RWR74081.1 162 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGLIIFSSTGKLYDFAS 211
                 8***********************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MPVVFSPTCA GVYSFSVGSL KGPTTLIDTK RKKARDDKTD TILAVQPSDT AILSGYSPIR  60
GRPKKGSDEI FAASKSRQNQ AQCDWHLMQH GLIRLAFNAI PTRATTPHNV SHCYKLKCPN  120
TNQTKQSKDD RRTSLSLSLS TESYRISKSY PQMGRGKIVI RRIDNSTSRQ VTFSKRRNGL  180
LKKAKELAIL CDAEVGLIIF SSTGKLYDFA SSRCAPYQSP PYSSPSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.15e-34MIKC_MADS family protein