PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR74266.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HD-ZIP

Protein Properties

Length: 213aa MW: 24604.7 Da PI: 6.5258

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR74266.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.7e-19	52	104	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq++ Le F +++++ +++ +LA++lgL+ rqV vWFqNrRa++k RWR74266.1 52 KRRLSDEQVKFLEMNFGNEHKLESARKDRLAMELGLDSRQVAVWFQNRRARWK 104 5689************************************************9 PP
2	HD-ZIP_I/II	116.9	1.1e-37	51	142	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrls+eqvk+LE++F +e+kLe+ rK +la eLgl+ rqvavWFqnrRAR+k+kqlE++y +Lk+ ++a + ++++Le+ev +Lr++l+e RWR74266.1 51 KKRRLSDEQVKFLEMNFGNEHKLESARKDRLAMELGLDSRQVAVWFQNRRARWKSKQLEEEYVRLKNMHEATVVDKCKLEAEVLKLRDQLSE 142 9****************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence
MALNLQVEDN QALLISQYYS DLYNQLPQGE TRGRRRRKKA RGGESGGVAW KKRRLSDEQV 60 KFLEMNFGNE HKLESARKDR LAMELGLDSR QVAVWFQNRR ARWKSKQLEE EYVRLKNMHE 120 ATVVDKCKLE AEVLKLRDQL SEAQEKVRTL SEQSDGAWEG ERSCCSPSSS VSMDAHPTFF 180 GDFGVENSPQ DFFIIPENCH NISGMEWLDL FGP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	34	53	RRRRKKARGGESGGVAWKKR
2	34	54	RRRRKKARGGESGGVAWKKRR
3	35	54	RRRRKKARGGESGGVAWKKR
4	35	55	RRRRKKARGGESGGVAWKKRR
5	36	56	RRRRKKARGGESGGVAWKKRR
6	37	57	RRRRKKARGGESGGVAWKKRR
7	99	107	RRARWKSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	8e-57	HD-ZIP family protein