PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR74600.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C3H

Protein Properties

Length: 434aa MW: 47861.1 Da PI: 8.8499

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR74600.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.1	3.4e-09	51	76	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C ++ rtG C++G +C+F+H+p RWR74600.1 51 EEPDCAYYIRTGLCRFGMTCRFNHPP 76 5799********************97 PP
2	zf-CCCH	40.2	5.7e-13	96	121	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ RWR74600.1 96 GQPECQYYLKTGTCKFGATCKFHHPR 121 5799********************96 PP
3	zf-CCCH	31.8	2.3e-10	142	167	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C +++rt +Ck+G++CkF+H++ RWR74600.1 142 GEKECAYYLRTLQCKFGSTCKFHHPQ 167 7899********************97 PP
4	zf-CCCH	37.2	4.8e-12	302	327	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG Ck+G+ CkF+H++ RWR74600.1 302 DQPECQYYMKTGDCKFGAMCKFHHPR 327 689*********************96 PP
5	zf-CCCH	40.6	4.2e-13	347	372	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++lC+f++r+G+Ck+G++CkF H+ RWR74600.1 347 PGEPLCNFYSRYGICKFGPNCKFDHP 372 589**********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MESDDGIRIH GAAVIDGSSF SPSQLYEDRM WRKNMRPNEA IEFGPYPERP EEPDCAYYIR 60 TGLCRFGMTC RFNHPPNRML AVAAARIKGG YPERLGQPEC QYYLKTGTCK FGATCKFHHP 120 RDKAGIAGRV QSNTLGYPLR PGEKECAYYL RTLQCKFGST CKFHHPQPSN AMIPLRGSPV 180 YPPVHSPTAP GQQSYPGLSN WPLSRASFIP SPRWQGPSSY AQLILPQGVV PVAGWNAYPG 240 QMGSVSSSEN HQQTSGTSQI YGTSRQSEAT NATSQGLFYR SGSVPVGLYA LQRENVFPER 300 PDQPECQYYM KTGDCKFGAM CKFHHPRERL IPIPSCTLSP FGLPLRPGEP LCNFYSRYGI 360 CKFGPNCKFD HPVGFAYGFS TSPSAVPVVR HLLGSSSGMD AIPSSSERPA EAGTGKSRQP 420 SLSETRKMPS GDEN

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MESDDGIRIH GAAVIDGSSF SPSQLYEDRM WRKNMRPNEA IEFGPYPERP EEPDCAYYIR  60
TGLCRFGMTC RFNHPPNRML AVAAARIKGG YPERLGQPEC QYYLKTGTCK FGATCKFHHP  120
RDKAGIAGRV QSNTLGYPLR PGEKECAYYL RTLQCKFGST CKFHHPQPSN AMIPLRGSPV  180
YPPVHSPTAP GQQSYPGLSN WPLSRASFIP SPRWQGPSSY AQLILPQGVV PVAGWNAYPG  240
QMGSVSSSEN HQQTSGTSQI YGTSRQSEAT NATSQGLFYR SGSVPVGLYA LQRENVFPER  300
PDQPECQYYM KTGDCKFGAM CKFHHPRERL IPIPSCTLSP FGLPLRPGEP LCNFYSRYGI  360
CKFGPNCKFD HPVGFAYGFS TSPSAVPVVR HLLGSSSGMD AIPSSSERPA EAGTGKSRQP  420
SLSETRKMPS GDEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-163	C3H family protein