PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR74754.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

NF-YC

Protein Properties

Length: 269aa MW: 30360.8 Da PI: 4.9865

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR74754.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	57.3	3.5e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P +rikki++adedv +i+ +P l+ska elf+ +l r++ + +t+ ++++v++ ++fdfl +iv + RWR74754.1 6 DTRFPASRIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYDITLRRGAKTMSSLHLKQCVQSFNVFDFLREIVSK 86 5789*************************************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence
MRKKLDTRFP ASRIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YDITLRRGAK 60 TMSSLHLKQC VQSFNVFDFL REIVSKVPDY GCSDAAGEER PVARRRKAVE DDDNESDEES 120 KRSRTHETGQ SSSGRGRGRG RGRGRGRGSR ASEREIVHFE KCEEDPDISP QHKLNPNPER 180 AEDGIEAKES KANIISSPNA VVRNFDLNVD LNENGNNKVK SLPAPEPEIK HEEYPGWSLS 240 EMDNMTIDPI QLAQLSKQMD DDEDYDEEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	144	RGRGRGRGRG
2	135	145	RGRGRGRGRGR
3	137	146	RGRGRGRGRG
4	137	147	RGRGRGRGRGR
5	139	148	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	3e-64	NF-YC family protein