PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR74848.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 190aa    MW: 20895.8 Da    PI: 8.167
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR74848.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF564.9e-181053245
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                r e+   rq t+skR+ngi  KAeELS+LCd++v++++fs+ gk
  RWR74848.1 10 RLESAPARQNTYSKRKNGITNKAEELSILCDVDVLLLMFSPGGK 53
                5678889**********************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MGRSKITIRR LESAPARQNT YSKRKNGITN KAEELSILCD VDVLLLMFSP GGKPTLITGA  60
HSCWANIEKV NDMVRLCEME ESAVKSLDRL QKTKEEIFTQ ALHFGLAGGS SSTGHIFPVA  120
QRDVGCSMHP IQPSEKVGSG LHFNPEYPCH HGNSMHGPYR NIGVPSCPIQ HHEPRSSSSE  180
PLATSLLEKH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.17e-24M-type_MADS family protein