PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR75268.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HD-ZIP

Protein Properties

Length: 217aa MW: 24860.4 Da PI: 7.409

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR75268.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.6e-19	78	132	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Le+ F+++++++ e++eLA+kl+L+ rqV vWFqNrRa+ k RWR75268.1 78 RKKLRLSKDQSSLLEDSFKEHNTLTPMEKQELAEKLNLKPRQVEVWFQNRRARTK 132 778899***********************************************98 PP
2	HD-ZIP_I/II	123	1.4e-39	78	166	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlsk+q++lLE+sF+e+++L+p +K+ela++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eL+ + RWR75268.1 78 RKKLRLSKDQSSLLEDSFKEHNTLTPMEKQELAEKLNLKPRQVEVWFQNRRARTKLKQMEVDCEFLKRCCESLSEENRRLKKELQELK-S 166 69*************************************************************************************9.4 PP

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence
MEEEEICNTG LVLGIGPIGC GVSKKKCHLQ QKPPVQFHLL FPSVDEEQEV DGSSSKVTDE 60 GEDYGSRFGN DHERNHTRKK LRLSKDQSSL LEDSFKEHNT LTPMEKQELA EKLNLKPRQV 120 EVWFQNRRAR TKLKQMEVDC EFLKRCCESL SEENRRLKKE LQELKSIKLT SPFYIQLHKA 180 AATKISVCPS CERVAMNDGK IAKKEIFGAM EDSSMTN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	83	TRKKLRL
2	127	135	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	8e-63	HD-ZIP family protein