PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR75306.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

AP2

Protein Properties

Length: 468aa MW: 51839.5 Da PI: 7.1085

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR75306.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.2	2.6e-15	127	186	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g RWR75306.1 127 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 186 57*****************666664477446***********************98 PP
2	AP2	47.4	4.7e-15	229	280	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g RWR75306.1 229 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 280 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MDSSSQNWLA FSLSHQPSSN LCLFEAFNTS HGQVEDEVVA RSDLSMMDVG PKLEDFLGCG 60 STSTPMGRFS GELPPEHDVG LYDSDLKSIA AGFLRGYGAE QAVAEVDKSV LPLEAKKTVD 120 TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQSRKGR QVYLGGYDKE EKAARAYDLA 180 ALKYWGPTTT TNFPVSNYEK ELEDMKNMTR QEFVASLRRK SSGFSRGASI YRGVTRHHQH 240 GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDMS RYDVKSIMNS 300 NLPIGGITAK NKPSESSSDT NKSIESKYME DSFTSQSSSL TFSLPIKPDP QDYWSLLALQ 360 QNQSSQNNAK CNNPMFQPSP NTSAFHTPSS YNMDFSAASA INQGYLNGGM IQQQHQNPSS 420 IPFANPIPVT SSYDTATSYG SWGATSIHAY QTAKPNLAVL QTPIFGME

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MDSSSQNWLA FSLSHQPSSN LCLFEAFNTS HGQVEDEVVA RSDLSMMDVG PKLEDFLGCG  60
STSTPMGRFS GELPPEHDVG LYDSDLKSIA AGFLRGYGAE QAVAEVDKSV LPLEAKKTVD  120
TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQSRKGR QVYLGGYDKE EKAARAYDLA  180
ALKYWGPTTT TNFPVSNYEK ELEDMKNMTR QEFVASLRRK SSGFSRGASI YRGVTRHHQH  240
GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDMS RYDVKSIMNS  300
NLPIGGITAK NKPSESSSDT NKSIESKYME DSFTSQSSSL TFSLPIKPDP QDYWSLLALQ  360
QNQSSQNNAK CNNPMFQPSP NTSAFHTPSS YNMDFSAASA INQGYLNGGM IQQQHQNPSS  420
IPFANPIPVT SSYDTATSYG SWGATSIHAY QTAKPNLAVL QTPIFGME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	1e-151	AP2 family protein