PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR75407.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

AP2

Protein Properties

Length: 339aa MW: 37778.4 Da PI: 6.7989

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR75407.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	35.5	2.4e-11	39	95	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ + Aa a++ a++k++g RWR75407.1 39 SIYRGVTRHRWTGRYEAHLWDkNCWNEtQNKKGRQGAYDDETAAAHAYDLAALKYWG 95 57*****************99999998988888*89***********98 PP
2	AP2	51.3	2.8e-16	138	189	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g RWR75407.1 138 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 189 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
MGKSSKPNNN SNDNNSKSTT KVKRTRKSVP RESPTQRSSI YRGVTRHRWT GRYEAHLWDK 60 NCWNETQNKK GRQGAYDDET AAAHAYDLAA LKYWGQDTIL NFPASTYEEE LKEMEGQSKE 120 EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY ATQEEAATAY 180 DMAAIEYRGL NAVTNFDLSR YIKWLRPGSQ NPNSNTDQNP NPSPSPSTST SPNSDLGLGS 240 LHHHNQISGG GDGVLPPRGG GGALSLLLQS TKFKEMLERT SVADSPLTTP EADNPPRCSF 300 PDDIQTYFEC EDPGAGDDVI FGDLNTFVAP LIEGEWDEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	5e-97	AP2 family protein