PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR75725.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family FAR1
Protein Properties Length: 828aa    MW: 93355.4 Da    PI: 7.257
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR75725.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.59.5e-2353137291
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                  +n+YAk+vGF++++++s+kskr g     +f Cskeg++e+++++    ++ r+etr+gC a +kv+++++gkw+ ++++l+HnH ++p
  RWR75725.1  53 IFNSYAKRVGFKTKIRQSQKSKRLG-KCFVHFSCSKEGFKETRENA----SNARPETRCGCLAGMKVRLNESGKWKAIEVNLQHNHLVCP 137
                 69********************999.66789***********9888....99**********************************9875 PP
2FAR172.31.1e-22260342188
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                 +f+ +YAk+vGF++++++s+kskr g     +f Cskeg++e+++++    ++ r+ tr+gC a +kv++++ gkw+v++++l+HnH 
  RWR75725.1 260 RFFISYAKQVGFKTKIRQSQKSKRLG-KCFVHFSCSKEGFKETKETA----SKGRPDTRCGCSAGMKVRLNDLGKWKVAEVNLQHNHL 342
                 59*********************999.66789**********98777....999*********************************5 PP
3FAR175.41.1e-23487571190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 +f+n+YAkevGF++r+++s+kskr g     +f+C++eg++e++++     ++tr+ tr+gC a +kv+++  gkw+v +++l+HnH l+
  RWR75725.1 487 RFFNFYAKEVGFTTRIRQSQKSKRFG-RCFVHFCCNREGFKETNETV----SKTRPDTRCGCLAGMKVRLNGFGKWKVLEVNLHHNHLLN 571
                 59**********************99.66789*********998776....99**********************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 828 aa     Download sequence    
MDPLKEGETR NVEGDCATMN STDKEQAVET DLDAFVEPAV GMEFESDEEA HRIFNSYAKR  60
VGFKTKIRQS QKSKRLGKCF VHFSCSKEGF KETRENASNA RPETRCGCLA GMKVRLNESG  120
KWKAIEVNLQ HNHLVCPTKE GSLENLDDRL RKRLKLGVKS RHRVQVTSQE NVSGAEECEH  180
PTFEEIDSHD HITKFRQLKR SHEYSLMTVP SLGGEETRDT EGDCGIIKSV DKEQAIEGDL  240
MACVVPTVGM EFELDEEAHR FFISYAKQVG FKTKIRQSQK SKRLGKCFVH FSCSKEGFKE  300
TKETASKGRP DTRCGCSAGM KVRLNDLGKW KVAEVNLQHN HLVGHAKVHN HLSSPTNVVP  360
HKHLNEDLKK KMELYRLKRK RRLELSVKTH HRVEKKFRTV TDAGCEHLTF EEGDRQNHIA  420
NSSSLKQSHR DPLMVAHLME GGKTGYTEGD CALINSVNKE HAVEVDQNAC LVPLVGMEFE  480
SDEEAHRFFN FYAKEVGFTT RIRQSQKSKR FGRCFVHFCC NREGFKETNE TVSKTRPDTR  540
CGCLAGMKVR LNGFGKWKVL EVNLHHNHLL NPTKATSHRH LDDKVGKGLK LDETTGQQVQ  600
KTCEDYVTDA EGNSHSAFEE RDCQNDASTI IQSDWSHVSL ASYGPSIIQS KPDPTDVAAV  660
ARWLVSLNSW GVLSTISSDM GGAPFGNVVP FSDGIPGDGS GIPYFYLANL DPTTRNALND  720
ERSSFTICEF PLGACGREDH ENLTYTGLTL TGKLKLVNEE SKEVEFAEDA LFSKHAEMKN  780
WPKDQNFQFF KLAIENIFLI DWFGGPKPLA LAQYLLPRMD ELSLTSLP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148153DRLRKR
2377383LKRKRRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.13e-26FAR1 family protein