PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR76064.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

NF-YC

Protein Properties

Length: 285aa MW: 32001.6 Da PI: 4.9161

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR76064.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	57.8	2.4e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P +rikki++adedv +i+ +P l+ska elf+ +l r++ + + +t+ ++++v++ ++fdfl +iv + RWR76064.1 6 DTRFPASRIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYDITLQRGAKTMSSLHLKQCVQSFNVFDFLREIVSK 86 5789*************************************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence
MRKKLDTRFP ASRIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YDITLQRGAK 60 TMSSLHLKQC VQSFNVFDFL REIVSKVPDM GGSDATAGED RSITRRRKAV DDEDIDTDEE 120 SKRSRINQAG HSGSVRGRGR GRGRGRGRPS RVAERESTHY GKCEDDPDIS PQDNGKRNAN 180 PERLGNSVEA KESKENIVNS SDIAMVRNFD LNVGFCENVD TSAAPASVPK QEIRPEPEPV 240 PEPEIKHEEY PGWSLSDMHK MAIDPIQLAQ LNGRMDEEED YDEEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	145	RGRGRGRGRG
2	136	146	RGRGRGRGRGR
3	138	147	RGRGRGRGRG
4	138	148	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	3e-64	NF-YC family protein