PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR76156.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family HD-ZIP
Protein Properties Length: 172aa    MW: 19731.3 Da    PI: 5.7587
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR76156.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.2e-1879131456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 + +++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  RWR76156.1  79 KKRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 131
                 556899**********************************************9 PP
2HD-ZIP_I/II127.17.5e-4177167191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekk+rl+ eqvk+LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+kt qlEkdy++Lk++++a+k++n+++++++++L++e+
   RWR76156.1  77 EKKKRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTNQLEKDYDVLKKQFEAVKADNDAFHSQNNKLQAEV 167
                  69**************************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MTCNEMAFFP SNFILPTHEQ DHPSTSLNQI ISSCTPQIFG GVASLLGKRS LSFSRIEGCE  60
EMDGDDDLSD DCSQAGEKKK RLNMEQVKTL EKNFELGNKL EPERKMQLAR ALGLQPRQIA  120
IWFQNRRARW KTNQLEKDYD VLKKQFEAVK ADNDAFHSQN NKLQAEVYID IC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.13e-69HD-ZIP family protein