PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR76205.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family AP2
Protein Properties Length: 417aa    MW: 46043.3 Da    PI: 6.1078
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR76205.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91e-171565155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                s+ykGVr +k +g++v+eIr p++   r r++lg+++t+e+Aa+a +aa  +l+g
  RWR76205.1 15 SKYKGVRKRK-WGKYVSEIRLPNS---RERIWLGSYDTPEKAARAFDAAVFCLRG 65
                89*****999.**********933...5*************************98 PP
2AP258.61.6e-18243293256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 +ykGVr +k +g+WvAe+r p++   r r++lg++ tae+Aa+a++aa  +l+g+
  RWR76205.1 243 RYKGVRMRK-WGKWVAEVRLPNS---RERIWLGSYETAEMAARAYDAAVFCLRGA 293
                 6******99.*******999833...5*************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    
MVKPTSEKQN IDMESKYKGV RKRKWGKYVS EIRLPNSRER IWLGSYDTPE KAARAFDAAV  60
FCLRGRKAKF NFPDNPPEIP GGTSLAPTEI QAVAARFANE APSLEPMLDK DQLPSESPSE  120
AASPSSELSS STGSDIGLTA ESELTMDWSF LESLGTAGLG KDLPDYGGFP VASTCRYPSQ  180
TRFLLLSPRA FHYKLQHPRR HCPHYSFASK TLKSKRNGTT RENVTRPMKL SSENPKESDT  240
GARYKGVRMR KWGKWVAEVR LPNSRERIWL GSYETAEMAA RAYDAAVFCL RGASAKLNFP  300
ETPPDIPSAE SLTPEQIRTA AARFAYQYSS AAGSSAAEAP GTSAPAEVEI PVEGGSNWAE  360
TMAMEENPDW AFFGSSAGLD VYPSDCYFQV GQRAETEEDE EQSTSGAFYQ SHGLWNF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11824KGVRKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.18e-47ERF family protein