PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR76278.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C3H

Protein Properties

Length: 458aa MW: 50526.7 Da PI: 7.8706

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR76278.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.6	1.7e-12	51	76	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++rtG+C yG+rC+F+H+ RWR76278.1 51 PGEPDCMYYLRTGFCGYGSRCRFNHP 76 5789*********************9 PP
2	zf-CCCH	35.3	2e-11	94	118	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++tGtC++G++Ck++H++ RWR76278.1 94 QPDCQYFLKTGTCRFGATCKYHHPR 118 789********************96 PP
3	zf-CCCH	34.5	3.6e-11	142	163	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G Ck+ H++ RWR76278.1 142 CSYYMRTGSCKFGIACKYDHPQ 163 ********************97 PP
4	zf-CCCH	41.1	2.9e-13	305	329	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++Cr++++tG CkyG++Ck++H++ RWR76278.1 305 QPECRYYMKTGSCKYGSTCKYHHPK 329 799********************96 PP
5	zf-CCCH	34.2	4.3e-11	349	375	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C f++ +G+CkyG++Ck+ H++ RWR76278.1 349 PGQAICTFYRMYGICKYGSTCKYDHPM 375 5789*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MPGNWGAQMN GVSRSSNMDN SKLEDSMWHL KIQVDKQDGV EDNSNLYPDR PGEPDCMYYL 60 RTGFCGYGSR CRFNHPTKRG QITQSRELPE RVGQPDCQYF LKTGTCRFGA TCKYHHPRDR 120 HDAEQVPLNI LGLPMRQEEN SCSYYMRTGS CKFGIACKYD HPQPAAVGAV LPIVPSAYCY 180 TGAQMTPTSG LSNVGDLPAW SLPNVSYMST SRMQSPLSYM PVVLSPSQGM IPAQQGWSTY 240 MATVLFHLLH ASDPCFTADQ SALSPGSSSD TITTNLVYNS KHLGDPVSSG SLLTSVQQFP 300 ERSDQPECRY YMKTGSCKYG STCKYHHPKE RHVPLATGTL SPQGLPLRPG QAICTFYRMY 360 GICKYGSTCK YDHPMAGYYN YSLPAFSIPD TSLTPYQSSF QISHASSESS PSKASKSSYQ 420 VTEPEAVGTK RQSPNKEAPE SATPQTVSQS QTIPISSD

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MPGNWGAQMN GVSRSSNMDN SKLEDSMWHL KIQVDKQDGV EDNSNLYPDR PGEPDCMYYL  60
RTGFCGYGSR CRFNHPTKRG QITQSRELPE RVGQPDCQYF LKTGTCRFGA TCKYHHPRDR  120
HDAEQVPLNI LGLPMRQEEN SCSYYMRTGS CKFGIACKYD HPQPAAVGAV LPIVPSAYCY  180
TGAQMTPTSG LSNVGDLPAW SLPNVSYMST SRMQSPLSYM PVVLSPSQGM IPAQQGWSTY  240
MATVLFHLLH ASDPCFTADQ SALSPGSSSD TITTNLVYNS KHLGDPVSSG SLLTSVQQFP  300
ERSDQPECRY YMKTGSCKYG STCKYHHPKE RHVPLATGTL SPQGLPLRPG QAICTFYRMY  360
GICKYGSTCK YDHPMAGYYN YSLPAFSIPD TSLTPYQSSF QISHASSESS PSKASKSSYQ  420
VTEPEAVGTK RQSPNKEAPE SATPQTVSQS QTIPISSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	5e-97	C3H family protein