PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR76402.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 294aa MW: 33560.1 Da PI: 6.2533

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR76402.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	64.4	2.1e-20	22	69	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WTteEd+llv+++ ++G g+W++ a++ g++Rt+k+c++rw++yl RWR76402.1 22 RGPWTTEEDLLLVNYISKHGEGRWNSLAQCAGLKRTGKSCRLRWLNYL 69 89********************************************97 PP
2	Myb_DNA-binding	49	1.4e-15	75	118	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++ RWR76402.1 75 RGNITLEEQLLILELHSRWGNR-WSKIAQFLP-GRTDNEIKNYWRT 118 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence
MNSQGQSCVS ESQSEEEMDM RRGPWTTEED LLLVNYISKH GEGRWNSLAQ CAGLKRTGKS 60 CRLRWLNYLR PDVRRGNITL EEQLLILELH SRWGNRWSKI AQFLPGRTDN EIKNYWRTRV 120 QKQAKQLKCD VNSKQFKDNM RYVWMPRLIE RIQAASSRGS HNSSSSISNS TFNGFKANSN 180 SVESATQTYE LGCGQVNTNL GPEQSSNGAS SDSVGTQLVS EVDCSFLQGN NKNNHLQANQ 240 ISYPETLVSP HGYFNHELDF SVTQQDEWFG GDISENVWGM EDIWVFEEQL CRGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	2e-82	MYB family protein