PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR76461.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 373aa MW: 41692.3 Da PI: 4.6445

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR76461.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.1	7.6e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEde+l +++++ G g+W++ +++ g+ R++k+c++rw +yl RWR76461.1 14 KGRWTAEEDEILTRYIQENGEGSWRSLPKKAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	48.7	1.8e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eEd+ +++++ +G++ W++Ia +++ gRt++++k++w+++l RWR76461.1 67 RGNISAEEDDVIIKLHSSFGNR-WSLIAGYLP-GRTDNEIKNYWNSHL 112 7899****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MGRAPCCEKV GLKKGRWTAE EDEILTRYIQ ENGEGSWRSL PKKAGLLRCG KSCRLRWINY 60 LREDIKRGNI SAEEDDVIIK LHSSFGNRWS LIAGYLPGRT DNEIKNYWNS HLSKRIRSFT 120 RPNKDGLSMP EDMGVGKIVG CCKRRGGRTS RSAMKNNLNL VEMGREKQHG KSVTPNLPQL 180 LDKEAQTWQC QNVGRESMAL GPSEDRETEG FGPHVGLKCG ILSCPNERMG SMGLATNEER 240 NSGERENGNL GTNEAIGDEF LCLDEGIDGP NEESEGGVVG ANKESESEVM GASEERRESE 300 WSSLAWFDDS VGGLQEEWEW NKLEDKMKAD GAGETWPWLQ SSSSNGDQDY LSMDEFEQEQ 360 IGAWLMPGDI DAL

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MGRAPCCEKV GLKKGRWTAE EDEILTRYIQ ENGEGSWRSL PKKAGLLRCG KSCRLRWINY  60
LREDIKRGNI SAEEDDVIIK LHSSFGNRWS LIAGYLPGRT DNEIKNYWNS HLSKRIRSFT  120
RPNKDGLSMP EDMGVGKIVG CCKRRGGRTS RSAMKNNLNL VEMGREKQHG KSVTPNLPQL  180
LDKEAQTWQC QNVGRESMAL GPSEDRETEG FGPHVGLKCG ILSCPNERMG SMGLATNEER  240
NSGERENGNL GTNEAIGDEF LCLDEGIDGP NEESEGGVVG ANKESESEVM GASEERRESE  300
WSSLAWFDDS VGGLQEEWEW NKLEDKMKAD GAGETWPWLQ SSSSNGDQDY LSMDEFEQEQ  360
IGAWLMPGDI DAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49330.1	2e-74	MYB family protein