PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR76534.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 511aa MW: 56131.8 Da PI: 8.5146

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR76534.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	81	103	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H RWR76534.1 81 FVCEICNKGFQRDQNLQLHRRGH 103 89*******************88 PP
2	zf-C2H2	15.9	3.7e-05	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k Hi+t+ RWR76534.1 157 WKCDKCSKKYAVQSDWKAHIKTC 179 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
MSNLSGDGGS FSSGNTREEE QQMLHQTHFN GSNSGATATN SSGSTSQQPH IKKKRNLPGN 60 PDPSAEVIAL SPTTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRTTAEIRKR 120 VYICPITTCV HHNPSRALGD LTGIKKHYCR KHGEKKWKCD KCSKKYAVQS DWKAHIKTCG 180 TKEYKCDCGT IFSRRDSFIT HRAFCDALTE ENNKANQGLM PTMEGNLQTH VPELMTSFPS 240 NNSASNPISD FNREGKNPLK SLSHDPMSMQ LKPLNMEGGS MFSNHLFGPR NFSSLSLEGL 300 IDNKHGGQMV NTAHTSATAL LQKAAQMGAT ASSNMGPPMM QRGFAGVVGS SDSGFSNQFM 360 HKDPPDMSHF FHSTTAESAA AMNDMGMYST AALGLFMSGD QDHDHFLKNI EHESSNSGGG 420 GNLLHHDSRN AHLGLGGSRF GGRGSGDPMI VDFMGVGGPR TANLHEQQQH HHQQQGLGFE 480 GVGQQRLHGL HQLQDHLPHG QVELEKPMWN V

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

MSNLSGDGGS FSSGNTREEE QQMLHQTHFN GSNSGATATN SSGSTSQQPH IKKKRNLPGN  60
PDPSAEVIAL SPTTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRTTAEIRKR  120
VYICPITTCV HHNPSRALGD LTGIKKHYCR KHGEKKWKCD KCSKKYAVQS DWKAHIKTCG  180
TKEYKCDCGT IFSRRDSFIT HRAFCDALTE ENNKANQGLM PTMEGNLQTH VPELMTSFPS  240
NNSASNPISD FNREGKNPLK SLSHDPMSMQ LKPLNMEGGS MFSNHLFGPR NFSSLSLEGL  300
IDNKHGGQMV NTAHTSATAL LQKAAQMGAT ASSNMGPPMM QRGFAGVVGS SDSGFSNQFM  360
HKDPPDMSHF FHSTTAESAA AMNDMGMYST AALGLFMSGD QDHDHFLKNI EHESSNSGGG  420
GNLLHHDSRN AHLGLGGSRF GGRGSGDPMI VDFMGVGGPR TANLHEQQQH HHQQQGLGFE  480
GVGQQRLHGL HQLQDHLPHG QVELEKPMWN V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	3e-99	C2H2 family protein