PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR76554.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C3H

Protein Properties

Length: 462aa MW: 49596.5 Da PI: 7.7844

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR76554.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33	1e-10	38	64	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+ff rtG C +G+rC+++H++ RWR76554.1 38 PGEPDCKFFVRTGSCGFGARCRYNHPR 64 5789*********************96 PP
2	zf-CCCH	37.3	4.7e-12	86	110	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tG+Ck+G +CkF+H++ RWR76554.1 86 EPTCEYFMKTGYCKFGTTCKFHHPK 110 689********************96 PP
3	zf-CCCH	35.7	1.5e-11	131	156	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H+p RWR76554.1 131 GEKECSYYLKTGHCKFGITCKFHHPP 156 7899********************97 PP
4	zf-CCCH	37.4	4.3e-12	281	306	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Crf++rtG+CkyG+ C+++H+p RWR76554.1 281 GQPECRFYLRTGYCKYGSLCRYHHPP 306 5799********************97 PP
5	zf-CCCH	32	2.1e-10	328	352	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C+f+a+ G Ck+G +CkF H++ RWR76554.1 328 APVCPFYAQHGGCKFGLTCKFDHPM 352 589********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MIHPSMEGPT SDPDTDTGLE DSMWQLESGG GDPYPERPGE PDCKFFVRTG SCGFGARCRY 60 NHPRDRRAVA GGSRIENGEY PERVGEPTCE YFMKTGYCKF GTTCKFHHPK YGGGSASTVS 120 LNYDGYPLRP GEKECSYYLK TGHCKFGITC KFHHPPPSSI SMPAPPPTFY PTVQPHSVPS 180 PISSWEVARP LLPGSYVQGP YGPMLISSGV VQIPGWSPYP QPPINPVASP GTQHAVETGS 240 LYGLMHQLSP LAPAYPGPYS SSSPGPSRSN QKEHIFPERT GQPECRFYLR TGYCKYGSLC 300 RYHHPPERSM PITNCSLSLM GLPLRPGAPV CPFYAQHGGC KFGLTCKFDH PMGTLSYSPS 360 ASSLPDMPVV PYPVGSFMGS TDPSSSSSEL RPEFVAESSR ESFSTRIPLS KNTSSGSVGS 420 IFTKGGAPGP QAHAQAQSSG PSSTPSDGGS STGHVSENRS LS

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MIHPSMEGPT SDPDTDTGLE DSMWQLESGG GDPYPERPGE PDCKFFVRTG SCGFGARCRY  60
NHPRDRRAVA GGSRIENGEY PERVGEPTCE YFMKTGYCKF GTTCKFHHPK YGGGSASTVS  120
LNYDGYPLRP GEKECSYYLK TGHCKFGITC KFHHPPPSSI SMPAPPPTFY PTVQPHSVPS  180
PISSWEVARP LLPGSYVQGP YGPMLISSGV VQIPGWSPYP QPPINPVASP GTQHAVETGS  240
LYGLMHQLSP LAPAYPGPYS SSSPGPSRSN QKEHIFPERT GQPECRFYLR TGYCKYGSLC  300
RYHHPPERSM PITNCSLSLM GLPLRPGAPV CPFYAQHGGC KFGLTCKFDH PMGTLSYSPS  360
ASSLPDMPVV PYPVGSFMGS TDPSSSSSEL RPEFVAESSR ESFSTRIPLS KNTSSGSVGS  420
IFTKGGAPGP QAHAQAQSSG PSSTPSDGGS STGHVSENRS LS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-148	C3H family protein