PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR76664.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 708aa MW: 79725.6 Da PI: 5.995

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR76664.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.3e-14	490	536	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ RWR76664.1 490 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 536 7999********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 708 aa Download sequence
MPATSTSMAC PSSSRLQQML QAAAQGIQWT YSLFWQLCPK QGILVWGDGY YNGAIKTRKT 60 VQPMEVSTEE ASLQRSQQLR ELYESLAAGE TNQPARRPCA ALSPEDLTES EWFYLMCVSF 120 SFPPGVDLPG KAYTRRHHVW LTGANEADSR VFSRAILAKS ARIQTVVCIP LMDGVLELGT 180 TERVQEDLGL IQHAKSHFMD HCNQQHHPKP ALSEQSTSNP ASSPDQLRYH LTSIPPMLSA 240 VDPQVKEAEA THDEEDDDGE DEEEEEDELD SEAETERDSP TNGAPNPSHL HVPVTHGAVM 300 AQAAAEPSEL MQLDMSEDIR IGSPENCSNN VESELQQRPV DRQRHTESYQ SESAQPWTLL 360 QYEFGADPLP SGGSQIQELT QEDAHYSQTV SMILQFNASR WAVSSSASSN LRYSQQSAFS 420 KWTRISNRHH PLHHLPALDG TSQWMLKYVL FTLPLLYTKC RDENSLKSRD GSDGGTRLRK 480 SVSQDELSAN HVLAERRRRE KLNERFIILR SLVPFVTKMD KASILGDTIE YVKQLRKKIQ 540 DLESQNRQFA IDQRSKGKHA HDSNNSKEQC IQQKSRLAKA NVPQIMSNDR TWLPAMEKRK 600 MRIIEGTENP KTRAVEAIFS STVEVSIIES DGLLELKCPY RDGLLLEIMQ VLCQLRLEIT 660 AVQSSSTDGV FVAELRAKVK DKINGKKASI AEVKKAIYQI IPPQRYEQ

Sequence ? help Back to Top

Protein Sequence Length: 708 aa Download sequence

MPATSTSMAC PSSSRLQQML QAAAQGIQWT YSLFWQLCPK QGILVWGDGY YNGAIKTRKT  60
VQPMEVSTEE ASLQRSQQLR ELYESLAAGE TNQPARRPCA ALSPEDLTES EWFYLMCVSF  120
SFPPGVDLPG KAYTRRHHVW LTGANEADSR VFSRAILAKS ARIQTVVCIP LMDGVLELGT  180
TERVQEDLGL IQHAKSHFMD HCNQQHHPKP ALSEQSTSNP ASSPDQLRYH LTSIPPMLSA  240
VDPQVKEAEA THDEEDDDGE DEEEEEDELD SEAETERDSP TNGAPNPSHL HVPVTHGAVM  300
AQAAAEPSEL MQLDMSEDIR IGSPENCSNN VESELQQRPV DRQRHTESYQ SESAQPWTLL  360
QYEFGADPLP SGGSQIQELT QEDAHYSQTV SMILQFNASR WAVSSSASSN LRYSQQSAFS  420
KWTRISNRHH PLHHLPALDG TSQWMLKYVL FTLPLLYTKC RDENSLKSRD GSDGGTRLRK  480
SVSQDELSAN HVLAERRRRE KLNERFIILR SLVPFVTKMD KASILGDTIE YVKQLRKKIQ  540
DLESQNRQFA IDQRSKGKHA HDSNNSKEQC IQQKSRLAKA NVPQIMSNDR TWLPAMEKRK  600
MRIIEGTENP KTRAVEAIFS STVEVSIIES DGLLELKCPY RDGLLLEIMQ VLCQLRLEIT  660
AVQSSSTDGV FVAELRAKVK DKINGKKASI AEVKKAIYQI IPPQRYEQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	495	500	ERRRRE
2	496	501	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	2e-99	bHLH family protein