PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR76807.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 124aa    MW: 13945.7 Da    PI: 9.7974
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR76807.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.42.1e-141559649
                HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEE CS
      SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyey 49
                k   q  f++R +g++KKA+EL vLC+ ++avi++s+ tgk  ++
  RWR76807.1 15 KQFDQLRFTRRCKGLFKKAQELNVLCGSDIAVIVISNgTGKATTF 59
                5566788*****************************856777776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    
MGKRKLGIES KEEEKQFDQL RFTRRCKGLF KKAQELNVLC GSDIAVIVIS NGTGKATTFG  60
SSYPNSVINR YRSHNTTNGH SELQNSILAR SGEQMIFMND GNHQENMIQG QGYSVAYHFQ  120
KPNS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.18e-13MIKC_MADS family protein