PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR76948.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB_related

Protein Properties

Length: 1190aa MW: 131199 Da PI: 6.6729

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR76948.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.5	1.5e-08	439	477	4	44
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 WT eE ++ a + +G++ +++I++ + +Rt+ qck ++ RWR76948.1 439 WTDEEKSSFIMALRTYGKD-FARISKFVR-TRTRDQCKIFF 477 ***************99.*****.*****9766 PP

Sequence ? help Back to Top
Protein Sequence Length: 1190 aa Download sequence
MKAGITLIRE LLILMCLPSV RLYGEPDSAL STLIFASNKE LAREASEVFD NILPSNQPQS 60 DTGETASNIF CRKSGLHIQE KLSMHKHFQK FKEWVLTYKF RAFHHLWKED MRLLSLKNNR 120 VKSQKRFELS CRSSHSTYQK HRSSIHSRYT SPGNSTLVPT TRIANFTSSK LLSDSQIKRY 180 RNHLKMPALM ILEEQRHSRF ITKNGLVEDP CAVEKERKLI NSWLPDEKEI FMEKLATFGK 240 DFRKIASFLS HKTTADCIEF YYKNHKSESF EVVKKRFEFR KQPKSFPTNT YMVTSGKKWN 300 RDANAVPLDM LGAASTVASH TDDRETQKVY TGASIVGCHS YDRKASIVNG VLERTGSEGV 360 RRNESDAAAA DVLASISVEA VGSYIVSSVD PGDGWQEFTG KQAKSMVMER PFTPGVSEKI 420 DEGDAFSDDS CGELDSADWT DEEKSSFIMA LRTYGKDFAR ISKFVRTRTR DQCKIFFSKG 480 RKCLGLDLIH REPGNEGIRM SDTSGGRSDT EDNCIVDIDS AICSTQSCSK LDTDLPLAVR 540 NGCGGSGNAE KNLMKVELDA LSEKDEVGGT NLEAGTGMKE LDTGVHHFGD MGELVFDSDN 600 RSLKEDHDQS GSVPGVLQLD GVMTADAVLG CSNPSVSLLD YEAGSFVEAD KKVQRSGLAS 660 SYVQANCVST EVPQELDQST SFVVVEPTQE EQSQCKPFVG VEAMQETKTV SSDGLLNPKS 720 KPLQFQVAEI VPATGLADAR VPERVVVDGN SCNTSARDVP HSNGNGNSSL REVEVNAHSS 780 ATSVPGHQHQ MSLELLTYAQ KSQVFSWQLK DNCPSGLVNS PEAHHYDHLC QATQSVPDHE 840 VQGNKLRMAS ESSDFYQQNL PLQVFRGNPL RVQNKKEMNK HADMTSEKPV QKLSKINRDC 900 QVSQSNMLEK CDVSTSSVSV SGLSYVPKSN DRSEDLQRSS SQGMDTQVMG GYETEEQSLR 960 TGDVKLFGQI LSHLSPSNKE KNDKAVSSKP SQSFSFKLAE HVPHGTTIGS KIEASSYMGR 1020 QEFPVTSFGV WDVNRMHNGF PSSPGSAMLS AIHNYPVPTC QTEPRPLSAV LMRNDGVLGR 1080 VLGYPTKDAS GNVGLDGHQL YQTYEGTNVK PFSMDMKRQE HNGFEMLGFQ QQGGTLVGLN 1140 SIGGVGVGSC TSVSDPVAAL KKHFANVSRS GNGPACVIRE EEPWSGDVCR

Sequence ? help Back to Top

Protein Sequence Length: 1190 aa Download sequence

MKAGITLIRE LLILMCLPSV RLYGEPDSAL STLIFASNKE LAREASEVFD NILPSNQPQS  60
DTGETASNIF CRKSGLHIQE KLSMHKHFQK FKEWVLTYKF RAFHHLWKED MRLLSLKNNR  120
VKSQKRFELS CRSSHSTYQK HRSSIHSRYT SPGNSTLVPT TRIANFTSSK LLSDSQIKRY  180
RNHLKMPALM ILEEQRHSRF ITKNGLVEDP CAVEKERKLI NSWLPDEKEI FMEKLATFGK  240
DFRKIASFLS HKTTADCIEF YYKNHKSESF EVVKKRFEFR KQPKSFPTNT YMVTSGKKWN  300
RDANAVPLDM LGAASTVASH TDDRETQKVY TGASIVGCHS YDRKASIVNG VLERTGSEGV  360
RRNESDAAAA DVLASISVEA VGSYIVSSVD PGDGWQEFTG KQAKSMVMER PFTPGVSEKI  420
DEGDAFSDDS CGELDSADWT DEEKSSFIMA LRTYGKDFAR ISKFVRTRTR DQCKIFFSKG  480
RKCLGLDLIH REPGNEGIRM SDTSGGRSDT EDNCIVDIDS AICSTQSCSK LDTDLPLAVR  540
NGCGGSGNAE KNLMKVELDA LSEKDEVGGT NLEAGTGMKE LDTGVHHFGD MGELVFDSDN  600
RSLKEDHDQS GSVPGVLQLD GVMTADAVLG CSNPSVSLLD YEAGSFVEAD KKVQRSGLAS  660
SYVQANCVST EVPQELDQST SFVVVEPTQE EQSQCKPFVG VEAMQETKTV SSDGLLNPKS  720
KPLQFQVAEI VPATGLADAR VPERVVVDGN SCNTSARDVP HSNGNGNSSL REVEVNAHSS  780
ATSVPGHQHQ MSLELLTYAQ KSQVFSWQLK DNCPSGLVNS PEAHHYDHLC QATQSVPDHE  840
VQGNKLRMAS ESSDFYQQNL PLQVFRGNPL RVQNKKEMNK HADMTSEKPV QKLSKINRDC  900
QVSQSNMLEK CDVSTSSVSV SGLSYVPKSN DRSEDLQRSS SQGMDTQVMG GYETEEQSLR  960
TGDVKLFGQI LSHLSPSNKE KNDKAVSSKP SQSFSFKLAE HVPHGTTIGS KIEASSYMGR  1020
QEFPVTSFGV WDVNRMHNGF PSSPGSAMLS AIHNYPVPTC QTEPRPLSAV LMRNDGVLGR  1080
VLGYPTKDAS GNVGLDGHQL YQTYEGTNVK PFSMDMKRQE HNGFEMLGFQ QQGGTLVGLN  1140
SIGGVGVGSC TSVSDPVAAL KKHFANVSRS GNGPACVIRE EEPWSGDVCR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	3e-88	MYB family protein