PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR76984.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 400aa MW: 43828.5 Da PI: 6.0599

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR76984.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	72	92	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C+ Cgk F++ +L H+r RWR76984.1 72 HTCSVCGKDFKSMKSLSGHMR 92 79******************8 PP
2	zf-C2H2	11.1	0.0013	262	284	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C C+ksFs++ L H +H RWR76984.1 262 HICRTCNKSFSSHQALGGHRASH 284 68**************9999888 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MGDAENRSEE DGFYDLAKEF SVAENTSIDQ EPDHQLKNHN LYTAVVKEEN ADNVSNELVT 60 EYEAPQVARS EHTCSVCGKD FKSMKSLSGH MRCHPDRGWR GIQPPTVKNS SSSTISESRL 120 QKMDDQNDSA TTRESLASAL RHLVSWPVKK SRLTHKIPSF LSSMKDEDIE AACNIVRLSH 180 AVPLGREQGK IEQVLSHAVP LGREQGKIEQ VGEESEVNSL DSKLEKPRIM GQASGIEFKS 240 EATTEYRTTF MENGSFVSSA SHICRTCNKS FSSHQALGGH RASHKKGPGE VYEISVADGV 300 EDGVGYESLD AAHTKPLIEN DVAKAEIVHR CKTCNKTFPS GQALGGHQRC HWSGGVGAGS 360 GGVAGVEAPT TSVRLQEDQN RPRRQLLNFD LNEPPMAEES

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MGDAENRSEE DGFYDLAKEF SVAENTSIDQ EPDHQLKNHN LYTAVVKEEN ADNVSNELVT  60
EYEAPQVARS EHTCSVCGKD FKSMKSLSGH MRCHPDRGWR GIQPPTVKNS SSSTISESRL  120
QKMDDQNDSA TTRESLASAL RHLVSWPVKK SRLTHKIPSF LSSMKDEDIE AACNIVRLSH  180
AVPLGREQGK IEQVLSHAVP LGREQGKIEQ VGEESEVNSL DSKLEKPRIM GQASGIEFKS  240
EATTEYRTTF MENGSFVSSA SHICRTCNKS FSSHQALGGH RASHKKGPGE VYEISVADGV  300
EDGVGYESLD AAHTKPLIEN DVAKAEIVHR CKTCNKTFPS GQALGGHQRC HWSGGVGAGS  360
GGVAGVEAPT TSVRLQEDQN RPRRQLLNFD LNEPPMAEES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19580.2	3e-18	C2H2 family protein