PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR77159.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 589aa    MW: 65186.3 Da    PI: 5.5273
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR77159.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS457.96.1e-1402195891374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++ L++cA+a++++dl++a++l+ +l++l+s +gdp+qRl ay++e+L arla+s+  +ykal+++e +   sse l+++++++ev+P++kf++l aN
  RWR77159.1 219 LKQILITCARAIEDNDLQAAEWLIGELRNLVSVSGDPIQRLGAYMLEGLVARLASSGGAIYKALRCKEPA---SSELLSYMHILYEVCPYFKFGYLSAN 314
                 5789*****************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI ea++ e+rvHi+Df+i qG QW++L+qaLa+Rp+gpp++RiTg++++ s   +   l+ +g+rL+++Ae+++vpfef++ +  +  d+++ +L++
  RWR77159.1 315 GAIAEAMKDEDRVHIVDFQIAQGSQWVTLIQALAARPGGPPRMRITGIDDSMSAyaRGGGLHIVGQRLSRLAESCNVPFEFHA-APMSGCDVDVAHLEI 412
                 **************************************************888789999************************.89999********** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgEalaVn+ +qlh+++desvs+e++rd++L++vkslsPkvv++veqe+++n+++F+ rf+e+l+yy+a+f+s++++lpre++eri+vE+++l+r+iv
  RWR77159.1 413 RPGEALAVNFPFQLHHMPDESVSTENHRDRILRMVKSLSPKVVTLVEQESNTNTAPFFMRFVETLDYYTAIFESIDVTLPRENKERISVEQHCLARDIV 511
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n++acegaer+erhe l+kWr+r+++aGF+p+pl + +++++k+ll+++ ++ yr+ee++g l+lgW++r+Lv+ +aWr
  RWR77159.1 512 NIIACEGAERVERHELLGKWRARFMMAGFSPYPLCSLVNATIKTLLENYCEN-YRLEERDGVLYLGWMNRALVVSCAWR 589
                 *************************************************955.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    
MSSQSGSRQI VSGKNSEHVS DQPHNLSPSD LLVSGAYHLV GHPSMQTSVT SVSSSSGSKR  60
LFHQHDAIPV QEAESYHQTC SQPLDHLSSD EGCQGANYSV QTSKAQYCTL ESSSTSGSYA  120
VYNSPSTLSF SPSGSPLSQQ YCQSYPLDLH HHSPDYNYGS PISSSCITNE VNDLRNKLRE  180
LETVMLGPDS DITDSHESSF PGQASFEPRQ VLEIAQGDLK QILITCARAI EDNDLQAAEW  240
LIGELRNLVS VSGDPIQRLG AYMLEGLVAR LASSGGAIYK ALRCKEPASS ELLSYMHILY  300
EVCPYFKFGY LSANGAIAEA MKDEDRVHIV DFQIAQGSQW VTLIQALAAR PGGPPRMRIT  360
GIDDSMSAYA RGGGLHIVGQ RLSRLAESCN VPFEFHAAPM SGCDVDVAHL EIRPGEALAV  420
NFPFQLHHMP DESVSTENHR DRILRMVKSL SPKVVTLVEQ ESNTNTAPFF MRFVETLDYY  480
TAIFESIDVT LPRENKERIS VEQHCLARDI VNIIACEGAE RVERHELLGK WRARFMMAGF  540
SPYPLCSLVN ATIKTLLENY CENYRLEERD GVLYLGWMNR ALVVSCAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein