PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR77183.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MIKC_MADS

Protein Properties

Length: 225aa MW: 25575 Da PI: 9.5588

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR77183.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.9	3.5e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+SvLCda+vavi+fss+gkl ey+s RWR77183.1 9 KRIENKINRQVTFSKRRAGLLKKANEISVLCDADVAVIVFSSRGKLTEYAS 59 79***********************************************86 PP
2	K-box	69.1	1.4e-23	87	160	13	87
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 +es + e++kL+ + L ++Rh++GedL++L+ k+L+q+eqqLe++l++iRs+K++++ ++i lqk + l RWR77183.1 87 LNESGCLESRKLQTMADDLHINIRHMMGEDLDTLTTKQLEQIEQQLEDALQRIRSRKTQVMSDKIAALQKELH-L 160 4577899*************************************************************98543.3 PP

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KANEISVLCD ADVAVIVFSS RGKLTEYASN 60 SSMKGVIQRY ERYSSFGTES DRTSLELNES GCLESRKLQT MADDLHINIR HMMGEDLDTL 120 TTKQLEQIEQ QLEDALQRIR SRKTQVMSDK IAALQKELHL RDTNMAHGNL QQQSSPFFLP 180 IPFSSTGPQF GICQNREVGS EDESRGPPPG RTNSILPHWM LPRQQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	7e-58	MIKC_MADS family protein