PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR77184.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MIKC_MADS

Protein Properties

Length: 252aa MW: 29168.2 Da PI: 9.2906

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR77184.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.4	2.9e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELS+LCdaevaviifs +gklye++s RWR77184.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVAVIIFSARGKLYEFCS 59 79***********************************************96 PP
2	K-box	67.3	5.2e-23	85	150	11	76
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleq 76 ++++s++qe++kLk+++e Lqr+qR+llGedL++LslkeL+qLe qLe slk+ ++++ l++ RWR77184.1 85 LRDTQSSYQEYSKLKARVEVLQRNQRNLLGEDLGPLSLKELEQLEIQLEMSLKQFGRQRTRSLTMR 150 56789*************************************************988888888765 PP
3	K-box	15.8	5.8e-07	174	204	69	99
K-box 69 KnellleqieelqkkekelqeenkaLrkkle 99 +++++l+q+++l++ke+ l e n+aL++kl RWR77184.1 174 QTQFMLDQLSDLKRKEQVLLESNRALKRKLV 204 689*************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVAVIIFSA RGKLYEFCSS 60 SSIPKILERY QKCSTSGAVE ADPSLRDTQS SYQEYSKLKA RVEVLQRNQR NLLGEDLGPL 120 SLKELEQLEI QLEMSLKQFG RQRTRSLTMR KEAYSCYACL LTFLESFFSW YVWQTQFMLD 180 QLSDLKRKEQ VLLESNRALK RKLVEAGTEN QNQLLWESSG ENVNYSRQAP NSEGFFQPLD 240 RDPTLQIGYS SS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.1	4e-76	MIKC_MADS family protein