PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR77397.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

YABBY

Protein Properties

Length: 183aa MW: 20592.8 Da PI: 9.3804

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR77397.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	215.6	1.5e-66	6	167	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekls 102 + +seqvCy+ CnfCn ilavsvPs+slf +vtvrCGhCt+l svn+a a q ++ + +s+k++ + + ++ ++++ ++s++ ++ + RWR77397.1 6 DLTSEQVCYIPCNFCNIILAVSVPSNSLFDIVTVRCGHCTNLWSVNMAAALQSMSWQGIQVKSIKNSRALNPSFAPPEYRMEL----ASSSKCNKVAML 100 5689****************************************9999988887775444444444444444444444433....333333333444 PP YABBY 103 enedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + ++ +v r ++rPPek+qrvPsayn+fikeeiqrika+nP+i+h+eafs+aaknWahfP+ihfgl RWR77397.1 101 KPTSSNVER-TVINRPPEKKQRVPSAYNQFIKEEIQRIKANNPEITHKEAFSTAAKNWAHFPHIHFGL 167 555566665.4579**************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence
MSNCIDLTSE QVCYIPCNFC NIILAVSVPS NSLFDIVTVR CGHCTNLWSV NMAAALQSMS 60 WQGIQVKSIK NSRALNPSFA PPEYRMELAS SSKCNKVAML KPTSSNVERT VINRPPEKKQ 120 RVPSAYNQFI KEEIQRIKAN NPEITHKEAF STAAKNWAHF PHIHFGLMLE NNKAKLNQDL 180 RGI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.1	1e-78	YABBY family protein