PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR77694.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family MYB
Protein Properties Length: 312aa    MW: 34516.2 Da    PI: 5.4379
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR77694.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-173077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEdell +++++ G g+W+t +++ g+ R++k+c++rw +yl
       RWR77694.1 30 RGPWTPEEDELLSNYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 77
                     89******************************99************97 PP
2Myb_DNA-binding475.7e-1588128648
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
       RWR77694.1  88 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 128
                      89***************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MRNPSKTASG SSGMGSSKTT PCCSKVGLKR GPWTPEEDEL LSNYINKEGE GRWRTLPKRA  60
GLLRCGKSCR LRWMNYLRPS VKRGQIAPDE EDLILRLHRL LGNRWSLIAG RIPGRTDNEI  120
KNYWNTHLSK KLISQGIDPR THKPLNPNPN SYAPEPGHNP NPNPNPNPNP NFSGLEEMGG  180
DSGSHSLNSI GDEEGTNLDK RGTTTTRAGE GINENSKNSD GFMTTGLHNG NEDGDMDYCT  240
DDVFSSFLNS LINEEMFLQQ QQQQNLVAPS DSLISPMPDF SYGTMWDPAV LSPAVAANED  300
DSVRFADDVE QR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.15e-87MYB family protein