PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR77788.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 444aa MW: 47908.3 Da PI: 8.087

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR77788.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.7	9e-13	372	417	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +AveYIk+Lq RWR77788.1 372 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 417 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MYNSQTTSND LNLSFPAAFK HEKVEFHKTR EAMASDLCHQ QQLNSSLMRF RSAPSTLLAN 60 FMDDDFLPRS TSPEAESMFA RFMSCGGGDS ASPDLHEIGE KPSAAAAAAA AASQRNSQFI 120 TGIEHEAEVV PQQNGFASAS QMMYQTNPLP NHSSATVAGI ESSYRNSMAV DTAQVKSSSN 180 CSNLIRHSSS PAGLFANLTV ENGYGVMRGM GSFRGGNGIN GETTASASRF KNQMSLLSRQ 240 ASSPGQMSQI SEMGSESLGG SSPDDGSLGN GNGTGRVYIP GGFPISSWDD SSLENFTGVK 300 RVRDVNGKMI SSLNPSEAQN GEGGNHSHGL THQFSLPKTS SEIAAVDKFL QFQDSVPCKI 360 RAKRGCATHP RSIAERVRRT RISERMRKLQ ELVPNMDKQT NTADMLDLAV EYIKDLQRQV 420 KTFSDNRASC TCPSKQKPFS KPAV

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MYNSQTTSND LNLSFPAAFK HEKVEFHKTR EAMASDLCHQ QQLNSSLMRF RSAPSTLLAN  60
FMDDDFLPRS TSPEAESMFA RFMSCGGGDS ASPDLHEIGE KPSAAAAAAA AASQRNSQFI  120
TGIEHEAEVV PQQNGFASAS QMMYQTNPLP NHSSATVAGI ESSYRNSMAV DTAQVKSSSN  180
CSNLIRHSSS PAGLFANLTV ENGYGVMRGM GSFRGGNGIN GETTASASRF KNQMSLLSRQ  240
ASSPGQMSQI SEMGSESLGG SSPDDGSLGN GNGTGRVYIP GGFPISSWDD SSLENFTGVK  300
RVRDVNGKMI SSLNPSEAQN GEGGNHSHGL THQFSLPKTS SEIAAVDKFL QFQDSVPCKI  360
RAKRGCATHP RSIAERVRRT RISERMRKLQ ELVPNMDKQT NTADMLDLAV EYIKDLQRQV  420
KTFSDNRASC TCPSKQKPFS KPAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-83	bHLH family protein