PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR77995.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family LBD
Protein Properties Length: 171aa    MW: 18438.3 Da    PI: 6.482
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR77995.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.42.9e-302103197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C ++Cvl+p++     +++q++++ +++k+FG++ ++++++a+p ++r+++++sl+yeA+ r+ +Pv+Gavg+++++ ++l+q+++e+
  RWR77995.1   2 SCNGCRVLRKGCGESCVLRPCLmwidtADAQANATVFLAKFFGRAGLMSFISAVPINQRPALFRSLLYEACGRTVNPVHGAVGLLWTGDWHLCQTAVET 100
                 6*********************9999777889****************************************************************999 PP

      DUF260  95 all 97 
                 +l+
  RWR77995.1 101 VLR 103
                 876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    
MSCNGCRVLR KGCGESCVLR PCLMWIDTAD AQANATVFLA KFFGRAGLMS FISAVPINQR  60
PALFRSLLYE ACGRTVNPVH GAVGLLWTGD WHLCQTAVET VLRGGALRQL EDVPPPEVGK  120
EFGSGSEFDD VARLQPCDLD LSLKWSPILA KSKGESRPPM ESEGSAVIGT I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-65LBD family protein