PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR78028.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 111aa    MW: 12839.3 Da    PI: 10.4518
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR78028.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.11.5e-25958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                k+ien + rqvtfskRrng++KKA+ELSvLCd++ a+i+fs++g+l  +s
  RWR78028.1  9 KKIENVTSRQVTFSKRRNGLIKKAYELSVLCDVDLALILFSPSGRLSFFS 58
                68*******************************************98776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    
MGRMKVEIKK IENVTSRQVT FSKRRNGLIK KAYELSVLCD VDLALILFSP SGRLSFFSGR  60
KRVEEVLARF VNLPEHERGP YVDIVALISI GFVTSFVYLL FFYLMRTLVF L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.14e-41MIKC_MADS family protein