PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR78065.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 517aa MW: 58122.9 Da PI: 7.4968

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR78065.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.3	9.8e-12	335	379	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++fe Lr llP+ K Ka++L k++eY+ksL RWR78065.1 335 HMISERKRREKLNESFEALRALLPPG-----IKKYKASVLSKTMEYLKSL 379 8899******************96.....4889***********99 PP

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence
MDSVFYLEGK ALSNFLQSLG QTLGCSYICL WSYLPPPHNV LISKGGWYDD DSNRPSSSAG 60 SFPRSLFDAY MHCICSIENG GVPGKAFKEG LPSLELGGLE LLNLASIEIQ RQFYQEARIQ 120 TAIFNGCRTG VMEIGMSSPT QKNISIEMGK WFPEDFTPHQ QLRDPRLPDQ SRPSSSSSSL 180 RSLSVGSPEY SSLFDLVSAS FVPDSTQEAP IERAIRPTSV SGPPYQLTMQ AYSQQSNVYL 240 PRPAIEDAAM TRAMLAVISS PSSSSSSYNP QNPTHRHQRS NQRTAFRAYD SALGPNFERR 300 PSSYSQSNMK RMLALLRTIR PQMQEIRSSS TQLHHMISER KRREKLNESF EALRALLPPG 360 IKKYKASVLS KTMEYLKSLK AQVLELQEKN SSLEASLLSV KEPLQEPLQE IRSERTVVQV 420 VEAPESSSQS RRIELRVIVR EEDCEMTDLL LRVLECLKQM QDVSLVSIDA DTHLQETNQI 480 NRAIFRLQIK ASDWNQEAFE EVVTRAIADM GRRGPPI

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence

MDSVFYLEGK ALSNFLQSLG QTLGCSYICL WSYLPPPHNV LISKGGWYDD DSNRPSSSAG  60
SFPRSLFDAY MHCICSIENG GVPGKAFKEG LPSLELGGLE LLNLASIEIQ RQFYQEARIQ  120
TAIFNGCRTG VMEIGMSSPT QKNISIEMGK WFPEDFTPHQ QLRDPRLPDQ SRPSSSSSSL  180
RSLSVGSPEY SSLFDLVSAS FVPDSTQEAP IERAIRPTSV SGPPYQLTMQ AYSQQSNVYL  240
PRPAIEDAAM TRAMLAVISS PSSSSSSYNP QNPTHRHQRS NQRTAFRAYD SALGPNFERR  300
PSSYSQSNMK RMLALLRTIR PQMQEIRSSS TQLHHMISER KRREKLNESF EALRALLPPG  360
IKKYKASVLS KTMEYLKSLK AQVLELQEKN SSLEASLLSV KEPLQEPLQE IRSERTVVQV  420
VEAPESSSQS RRIELRVIVR EEDCEMTDLL LRVLECLKQM QDVSLVSIDA DTHLQETNQI  480
NRAIFRLQIK ASDWNQEAFE EVVTRAIADM GRRGPPI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	339	344	ERKRRE
2	340	345	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	5e-43	bHLH family protein