PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR78085.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 304aa MW: 34009.4 Da PI: 6.443

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR78085.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.6	1.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+++++ +G g+W+t++r g+ R++k+c++rw +yl RWR78085.1 14 KGLWSPEEDEKLINCITTYGHGCWSTVPRIAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	54.4	2.9e-17	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E+ l++d+++ lG++ W+ Iar+++ gRt++++k++w+ RWR78085.1 67 RGNFSPQEESLIIDLHRILGNR-WAQIARHLP-GRTDNEVKNFWN 109 89******************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence
MGHHSCCNKQ KVRKGLWSPE EDEKLINCIT TYGHGCWSTV PRIAGLQRCG KSCRLRWINY 60 LRPDLKRGNF SPQEESLIID LHRILGNRWA QIARHLPGRT DNEVKNFWNS SIKKKLISHD 120 GVPELTIHET SNQNPYVGDS LLAPNPNPNL TTTAQDHVLL QSASSVQHGF GHGHLKTDVI 180 NCIVDWTGGP PSVEKSDYDH PTWSLDQQHH LEAKFLDTKF MRSSDPSLVS TMPQLCDLVE 240 ADECHIPYDT VSYEVDDMGG TLPCFSSGSY VPMNQLDCMD AAVMASSSLL SCGNFPLNPD 300 LPFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	2e-75	MYB family protein