PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR78108.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 511aa MW: 55508.3 Da PI: 4.4796

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR78108.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.2	1.2e-07	425	465	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+r+ +++ +L++l+P ++++ a++L +A +Y+k L RWR78108.1 425 ARQRRERVSDRIRTLQRLVPGG-----TRMDTASMLDEAANYLKFL 465 69****************87.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
MQYIDLPSYN PNAIFNTHAP SFPNDDDDDD DDDNDDEMLK SRETQQTLGS AMAATSCIWS 60 NQQHEISENS IESSADQCVI GSNIDLAHEF FHPYPEIQGI NMCNTSSSPE IGTQMVEQIA 120 PAFDSLSGAL NLNLLHCNDA IRSVANAALV KPGAGTSWGE AQTDELCCSP LINAPCGMSS 180 LGGLATNFGS SLKSQIAADN EDEKILFPIT DSIESLDCLL SARASTTEMS AEEDGISAIF 240 PNCRSLWSLS CSGAISSGES ENNGSNESNK DVHLLPSETD EAMSHGSSNL SSSPLGPTVT 300 VPSSKRSKEQ HQQEESNSKA SCPYLDLLPS DASTAGGCFQ LIPENLDKSK KPRLEKHHGP 360 FNIDFAQPNS TGSSSGQPDA EAVTHMKEMI YRAAAFRPVN FGMEVAEKPK RKNVRISSDP 420 QTVAARQRRE RVSDRIRTLQ RLVPGGTRMD TASMLDEAAN YLKFLRSQVD ALQTLGHKLD 480 SINYTPSTFL YSPSPNHPFP IQQNFYPYPK P

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

MQYIDLPSYN PNAIFNTHAP SFPNDDDDDD DDDNDDEMLK SRETQQTLGS AMAATSCIWS  60
NQQHEISENS IESSADQCVI GSNIDLAHEF FHPYPEIQGI NMCNTSSSPE IGTQMVEQIA  120
PAFDSLSGAL NLNLLHCNDA IRSVANAALV KPGAGTSWGE AQTDELCCSP LINAPCGMSS  180
LGGLATNFGS SLKSQIAADN EDEKILFPIT DSIESLDCLL SARASTTEMS AEEDGISAIF  240
PNCRSLWSLS CSGAISSGES ENNGSNESNK DVHLLPSETD EAMSHGSSNL SSSPLGPTVT  300
VPSSKRSKEQ HQQEESNSKA SCPYLDLLPS DASTAGGCFQ LIPENLDKSK KPRLEKHHGP  360
FNIDFAQPNS TGSSSGQPDA EAVTHMKEMI YRAAAFRPVN FGMEVAEKPK RKNVRISSDP  420
QTVAARQRRE RVSDRIRTLQ RLVPGGTRMD TASMLDEAAN YLKFLRSQVD ALQTLGHKLD  480
SINYTPSTFL YSPSPNHPFP IQQNFYPYPK P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	426	431	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	5e-71	bHLH family protein