PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR78138.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 286aa MW: 31409 Da PI: 8.0655

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR78138.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.5	4.7e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l ++v ++G+g +W + +++ g++R++k+c++rw++yl RWR78138.1 14 RGPWSPEEDTTLRNYVGKHGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	42.9	1.1e-13	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ + + G++ W+ Ia++++ gRt++++k++w++ RWR78138.1 69 GGFTEEEDNIICTLYQNIGSR-WSVIASRLP-GRTDNDVKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence
MGRAPCCDKA NVKRGPWSPE EDTTLRNYVG KHGTGGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPDIKHGG FTEEEDNIIC TLYQNIGSRW SVIASRLPGR TDNDVKNYWN TKLKKKHFAA 120 ISNFTANTNH IHLSTSTSPV AVIKSENHGN CFLNSISGNS TSLSSTGVGF ESKMDSLRLY 180 SDPIQFPLPD LKETSEFGVI SNSYDVSSSS SFPTDNSCIS WSGNANGEVG GFLMDVGYGS 240 AYDHLHGYGS QEKMLEVAPS FANFSFSSLL ASTESKPQGV YQSMTY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	2e-72	MYB family protein