PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR78276.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

FAR1

Protein Properties

Length: 976aa MW: 112237 Da PI: 7.3494

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR78276.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.9	1.5e-27	30	123	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHelap 91 +Yn+YA++vGFsvr++++++s+r+ge+++r fvCs+egkr+ ++ + ++k+++++++ r+gC+a l+vk+++ ++ wevt++++ HnH+l+p RWR78276.1 30 WYNDYARRVGFSVRIDRQERSRRDGEVISRVFVCSREGKRRVKDANkEKKTNTEQVNARVGCQAYLMVKRRRgpvEDCWEVTRFHELHNHDLVP 123 7**************************************99988234445578899*********99999*************986 PP
2	FAR1	86.6	3.7e-27	246	335	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +Yn++A++vGFsvr+++++ks+r+ge+++r fvCs+eg+r+e+ ++ ++rr+ + tr+gC+a lkvk+++ ++ w+vtk+++ HnH+l+ RWR78276.1 246 WYNDFARRVGFSVRINHQEKSRRDGEVISRSFVCSREGQRREKLNR--EKRRKVEPTRIGCQAYLKVKRRRsptEDFWVVTKFHKPHNHDLM 335 7***************************************9888..99999************9989999***********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 976 aa Download sequence
MESKDGNVEE NSSGLCLGMQ FKTADDAYRW YNDYARRVGF SVRIDRQERS RRDGEVISRV 60 FVCSREGKRR VKDANKEKKT NTEQVNARVG CQAYLMVKRR RGPVEDCWEV TRFHELHNHD 120 LVPPTKVPFL RSHKRRPPTT ENYIENIPNS RIHEDNNSSS PAEGATSSGN CVALEETATG 180 SGVADPVPNA EPSTDEADTL VEYMGQKPNS AESEPPLEVD PCPTLGGDSS PRLGMRFNTA 240 DDAYTWYNDF ARRVGFSVRI NHQEKSRRDG EVISRSFVCS REGQRREKLN REKRRKVEPT 300 RIGCQAYLKV KRRRSPTEDF WVVTKFHKPH NHDLMCPNKA ILLRSHRRIR RSMQSSVEDF 360 QNPFVSGDNT ASLLVGGSGL SNSVFSQRDS YNNLSTKRRV PLGKGDARAM LDYCKEMQKN 420 NPSFFYALQV DEDNRVRNFF WADSRSRMSY RYFGDVVFFD TTYRTDHYKV PLVAFNGVNH 480 HRQPVLFGCA LLCDDSEASF VWLFNVWLEA MFGRHPTTII TEQDAGMARA IARVFPRTNH 540 RLCMSLIIKK VPDILQQVYS EHRTFGDDFL ACCKLSDTIA QFEERWRQLL DDYGLGENIW 600 LRSLYDIRER WIPAYTRNTF SAGMLTSQQT ENPYSFFDGF VNKETTLQEF IKSFDKATDH 660 RYKEECEADF QTLYSNPVLK IYLPMEAQAP ETFTSVGNSV LKMQLPMEIQ AAESYTKVVF 720 KDFQEELVRS LCYAAEEVEG GWELKTYRVR EYWQDTQQHT VTFNVSETRA TCTCLMFESE 780 GILCRHALKI FLMCGVLELP SYYLLERWTR NAKSRDVYDQ QGVVMQVDWK KSATMRYNDL 840 CRRAIKCAED GATSVEVYDM AVSAIERCWK EIVEAKKIEA RNAQLSALLT GSIQEDNIEE 900 GSQVDHSSIQ INLEDPQGLI TKGGPSDQTF DGSLEKRKGA KTCSVCKGHD HNKRKCPHLE 960 GQREFLAVQD QLPTGQ

Sequence ? help Back to Top

Protein Sequence Length: 976 aa Download sequence

MESKDGNVEE NSSGLCLGMQ FKTADDAYRW YNDYARRVGF SVRIDRQERS RRDGEVISRV  60
FVCSREGKRR VKDANKEKKT NTEQVNARVG CQAYLMVKRR RGPVEDCWEV TRFHELHNHD  120
LVPPTKVPFL RSHKRRPPTT ENYIENIPNS RIHEDNNSSS PAEGATSSGN CVALEETATG  180
SGVADPVPNA EPSTDEADTL VEYMGQKPNS AESEPPLEVD PCPTLGGDSS PRLGMRFNTA  240
DDAYTWYNDF ARRVGFSVRI NHQEKSRRDG EVISRSFVCS REGQRREKLN REKRRKVEPT  300
RIGCQAYLKV KRRRSPTEDF WVVTKFHKPH NHDLMCPNKA ILLRSHRRIR RSMQSSVEDF  360
QNPFVSGDNT ASLLVGGSGL SNSVFSQRDS YNNLSTKRRV PLGKGDARAM LDYCKEMQKN  420
NPSFFYALQV DEDNRVRNFF WADSRSRMSY RYFGDVVFFD TTYRTDHYKV PLVAFNGVNH  480
HRQPVLFGCA LLCDDSEASF VWLFNVWLEA MFGRHPTTII TEQDAGMARA IARVFPRTNH  540
RLCMSLIIKK VPDILQQVYS EHRTFGDDFL ACCKLSDTIA QFEERWRQLL DDYGLGENIW  600
LRSLYDIRER WIPAYTRNTF SAGMLTSQQT ENPYSFFDGF VNKETTLQEF IKSFDKATDH  660
RYKEECEADF QTLYSNPVLK IYLPMEAQAP ETFTSVGNSV LKMQLPMEIQ AAESYTKVVF  720
KDFQEELVRS LCYAAEEVEG GWELKTYRVR EYWQDTQQHT VTFNVSETRA TCTCLMFESE  780
GILCRHALKI FLMCGVLELP SYYLLERWTR NAKSRDVYDQ QGVVMQVDWK KSATMRYNDL  840
CRRAIKCAED GATSVEVYDM AVSAIERCWK EIVEAKKIEA RNAQLSALLT GSIQEDNIEE  900
GSQVDHSSIQ INLEDPQGLI TKGGPSDQTF DGSLEKRKGA KTCSVCKGHD HNKRKCPHLE  960
GQREFLAVQD QLPTGQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	293	314	KRRKVEPTRIGCQAYLKVKRRR
2	294	315	KRRKVEPTRIGCQAYLKVKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-152	FAR1 family protein