PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR78390.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family MYB
Protein Properties Length: 314aa    MW: 35138.6 Da    PI: 7.3697
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR78390.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv +++q+G g+W+++++  g+ R+ k+c++rw +yl
       RWR78390.1 14 KGPWTPEEDIALVAYIQQYGAGNWRAVPANTGLSRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding42.61.4e-1367112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++ + E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
       RWR78390.1  67 RGNFAENEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                      799999****************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MGRPPCCDKT GMKKGPWTPE EDIALVAYIQ QYGAGNWRAV PANTGLSRCS KSCRLRWTNY  60
LRPGIKRGNF AENEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLRKKLKKLQ  120
TGLDGNMNDG LSGFQQISKG QWEKRLQTDI HMARQALCDA LSLEKPNNIP LSDSKASTGV  180
YPNTTRSTQS SSTYAWSTEN VSRLLEGWMK TDPKRPPQTN SQAKNPCATK MLSPEALESL  240
LTFDSSTSDT SQSVSFEETM NYGSDAALFH AESKPSLGGP VPLMMLERWL FDEAVAQGQD  300
ELMDIPLDEN NELV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-104MYB family protein