PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR78519.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

LBD

Protein Properties

Length: 166aa MW: 18719.1 Da PI: 7.8521

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR78519.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.1	2e-40	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaC++lrr+C++dC+++pyfp+++p++fa+vhk++Gasnv+k+l+++p + r +a++s+++eA+ar++dP+yG+vg+i++lq+++ + ela +++ RWR78519.1 6 RCAACRFLRRRCPEDCIFSPYFPSTDPQRFACVHKIYGASNVSKMLQQIPVHLRAHAADSIFFEAHARIQDPIYGCVGIISRLQHEIYANQRELANTQA 104 6*********************************************************************************************99987 PP DUF260 100 e 100 RWR78519.1 105 A 105 5 PP

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence
MSNHSRCAAC RFLRRRCPED CIFSPYFPST DPQRFACVHK IYGASNVSKM LQQIPVHLRA 60 HAADSIFFEA HARIQDPIYG CVGIISRLQH EIYANQRELA NTQAAIAFNN AQQAQAQGTQ 120 IQQLQHVDEA PGFIGSCHMD QPSLDHHYHV PGFLSEKTQK SLSRSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	6e-37	LBD family protein