PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR78657.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

E2F/DP

Protein Properties

Length: 391aa MW: 43923.5 Da PI: 9.424

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR78657.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	76.9	2e-24	14	79	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rkeksL ll+++flk + + +++ l+e+a +L v +rRRiYDi+NVLe++++++kk+kn+++wkg RWR78657.1 14 RKEKSLSLLCTNFLKHCDRDGVETIGLDEAAAKL---GV--ERRRIYDIVNVLESVGVLSKKAKNQYSWKG 79 79***************999********.....****************************98 PP
2	E2F_TDP	71.6	8.8e-23	161	245	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.........dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 rkeksL+lltq+f+kl+ +++ ++vtl+e+a+ L+ + + k+RR+YDi+NVL++lnliek ++++++rw g RWR78657.1 161 RKEKSLGLLTQNFVKLFLTANVDTVTLDEAARLLLGDsngssmltnNSAAKVRRLYDIANVLTSLNLIEKtqqieTRRPAFRWLG 245 79*****************************************977789*****************999999999999987 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MSSSSANRDH TYCRKEKSLS LLCTNFLKHC DRDGVETIGL DEAAAKLGVE RRRIYDIVNV 60 LESVGVLSKK AKNQYSWKGF EGIPKALEEL QGKALRETCG HSAVNSYDCT KGLDDDGNAE 120 DENLLVPSRG ELRRECSNLS SDLNGDSLSC SHSSKVKADN RKEKSLGLLT QNFVKLFLTA 180 NVDTVTLDEA ARLLLGDSNG SSMLTNNSAA KVRRLYDIAN VLTSLNLIEK TQQIETRRPA 240 FRWLGYNGKP DNAATFSTRA PNDQSKKRVF GSDVTNLDLV KRRPICTMDE KPIRVQMKSK 300 DPSAQKQSNQ MQQQQPSSKG YDFGPFRPVL QDREKAMKST QNCKAMASSH RPQYRNQALS 360 ELFAHYSEAW KSWYMEVTQV NNLKPERKAI H

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MSSSSANRDH TYCRKEKSLS LLCTNFLKHC DRDGVETIGL DEAAAKLGVE RRRIYDIVNV  60
LESVGVLSKK AKNQYSWKGF EGIPKALEEL QGKALRETCG HSAVNSYDCT KGLDDDGNAE  120
DENLLVPSRG ELRRECSNLS SDLNGDSLSC SHSSKVKADN RKEKSLGLLT QNFVKLFLTA  180
NVDTVTLDEA ARLLLGDSNG SSMLTNNSAA KVRRLYDIAN VLTSLNLIEK TQQIETRRPA  240
FRWLGYNGKP DNAATFSTRA PNDQSKKRVF GSDVTNLDLV KRRPICTMDE KPIRVQMKSK  300
DPSAQKQSNQ MQQQQPSSKG YDFGPFRPVL QDREKAMKST QNCKAMASSH RPQYRNQALS  360
ELFAHYSEAW KSWYMEVTQV NNLKPERKAI H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.2	1e-101	E2F/DP family protein