PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR78673.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

Whirly

Protein Properties

Length: 237aa MW: 26778.7 Da PI: 10.1037

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR78673.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	181.4	1.7e-56	59	195	2	138
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlp 100 ++k+kaal++ +v p+f++++sg+++l+r+G ++l++ +a+++rkydW+k+q+falsa e+++l++l++ +sceffhdp++++s +G+vrk+++v Pl+ RWR78673.1 59 IFKGKAALSMYPVPPKFNKMNSGSIHLERRGVVMLTFWPAIGQRKYDWQKRQHFALSAVELGSLISLGPTDSCEFFHDPSMNTSLAGQVRKTFQVSPLS 157 9************************************************************************************************ PP Whirly 101 dGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138 d G+++n+sv n +k ne+fsvPvskaefav+r+ + RWR78673.1 158 DDGGYYFNMSVVNPNQKINERFSVPVSKAEFAVMRTSF 195 *********************************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MMKLSRFFLS RSADNIKTSR IKDSLWSHNS TSLASISTAR ENLVTGGKYE GRPFVDYPIF 60 KGKAALSMYP VPPKFNKMNS GSIHLERRGV VMLTFWPAIG QRKYDWQKRQ HFALSAVELG 120 SLISLGPTDS CEFFHDPSMN TSLAGQVRKT FQVSPLSDDG GYYFNMSVVN PNQKINERFS 180 VPVSKAEFAV MRTSFSYILP HIMGWDCFTS PQPETTLKVN PPKQPGPLLS PDLEWNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71260.1	1e-69	Whirly family protein