PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR78813.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

Trihelix

Protein Properties

Length: 260aa MW: 30841.1 Da PI: 9.7215

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR78813.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.7	5.5e-22	20	101	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e+++ +++r e+++++ ++k++k lW+ +s+km+e+gf rs++qCk+kw+nl +ryk +++++++ +++p+ d+l+ RWR78813.1 20 QWSLNETREFLAIRAELDRTFMETKRNKLLWDVISSKMKEKGFIRSAEQCKCKWKNLVTRYKGSETMDQEN----MRQFPFHDELR 101 7******************************************************************9984....67899999886 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
MEAHYLNVNP HESGGDRFPQ WSLNETREFL AIRAELDRTF METKRNKLLW DVISSKMKEK 60 GFIRSAEQCK CKWKNLVTRY KGSETMDQEN MRQFPFHDEL RAIFAARMQR LLWLEAEGGT 120 SSGVAKKGIR SSSEEDNSNG ESDGERGVKK KRRSKPPAGD KGRASSSTTG GVNLQEVLEE 180 FMRQMMEMEM QWMKAAEARE EERRMKEMEW RQMMEALERD RIMMDRRWRE REEQRRMREE 240 ARAEKRDALI TALLNKIMRD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	153	KKKRR
2	149	156	KKKRRSKP
3	150	155	KKRRSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	9e-48	Trihelix family protein