PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR78868.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family bHLH
Protein Properties Length: 209aa    MW: 23211.7 Da    PI: 10.1148
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR78868.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.31.9e-153278354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                ++h+++E+rRR+riN+ +++Lr+l+P+a     +Kl+Ka+ L ++++++k+L
  RWR78868.1 32 QSHSQAEKRRRERINTHLSTLRRLVPSA-----TKLDKATLLGRVIDHVKEL 78
                79**************************.....9****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MVLPWPPHVS TSSCQVGGSE TSKEAKALIS SQSHSQAEKR RRERINTHLS TLRRLVPSAT  60
KLDKATLLGR VIDHVKELKR KALEIGNSFT VPTETDDVTV ECDRNGALKD RFIIRASLCC  120
DDRPELYTDL IQALHGLKLR TVRADMATLG GRVKNVLILS TKVGEEGACL STLKDSLKEV  180
LGRIVFTDVS SQNTNLSKRQ RTMPSFWSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.12e-35bHLH family protein