PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR78870.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB_related

Protein Properties

Length: 240aa MW: 27232.4 Da PI: 10.9311

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR78870.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.8	3.3e-15	5	43	8	47
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 Ed +l+++v q+G+++W++I+++++ gR++k+c++rw + RWR78870.1 5 EDAKLKKLVDQHGPRNWSLISSCIP-GRSGKSCRLRWCNQ 43 9**********************.*********985 PP
2	HLH	43.8	4.6e-14	118	166	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++++++++E+rRR+riN+ +++Lr+l+P+a +Kl+Ka+ L ++++++k+L RWR78870.1 118 KKEKKSQAEKRRRERINTHLSTLRRLVPSA-----TKLDKATLLGRVIDHVKEL 166 678999**********************.....9**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence
MAVSEDAKLK KLVDQHGPRN WSLISSCIPG RSGKSCRLRW CNQLSPAVEH PPPFQPKKMR 60 PSSPAHAAHG NMWPPSPAFS PARTDNAIKN HWNSTLRRRL RPQPRINLTK AETWFQSKKE 120 KKSQAEKRRR ERINTHLSTL RRLVPSATKL DKATLLGRVI DHVKELKRKA LEIGNSFTVP 180 TETDDVTVEC DRNGALKDRF IIRASLCCDD RPELYTDLIQ ALHGLKLRTV RADMATLGGE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	7e-34	MYB family protein