PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR78871.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 222aa MW: 25050 Da PI: 6.682

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR78871.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.2	9.3e-19	9	54	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+WT Ed +l+++v q+G+++W++I+++++ gR++k+c++rw + RWR78871.1 9 RGSWTVSEDAKLKKLVDQHGPRNWSLISSCIP-GRSGKSCRLRWCNQ 54 89****************************.*********985 PP
2	Myb_DNA-binding	54.8	2.2e-17	63	105	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++eEd ++ a++ +G++ W+tIar ++ gRt++ +k++w++ RWR78871.1 63 PFSAEEDATIIAAHAAHGNK-WATIARLLP-GRTDNAIKNHWNST 105 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence
MVGGAHRIRG SWTVSEDAKL KKLVDQHGPR NWSLISSCIP GRSGKSCRLR WCNQLSPAVE 60 HRPFSAEEDA TIIAAHAAHG NKWATIARLL PGRTDNAIKN HWNSTLRRRL GESSAESESD 120 SVRKRPRLFH SDGSPGNGEE EEKPLPRRDP PTLLMLFPPR QAEEKGEGVA DAIVHSPEEE 180 EEEEEAEEAQ RNLKEALHEV IKKEVRSYIN RLIAERDLHM EI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	5e-55	MYB family protein