PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR78903.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

LBD

Protein Properties

Length: 163aa MW: 18116.5 Da PI: 8.1165

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR78903.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.5	3.5e-41	10	107	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+l+r+C++dC++apyf +++p+kfanvhk+FGasnv+k+l+++p e r+da++sl+yeAear+rdPv G+vg i+ lq+++ ql+++la ++ RWR78903.1 10 PCAACKFLKRRCTPDCTFAPYFRSDEPQKFANVHKVFGASNVTKILNEVPLELRRDAVDSLAYEAEARLRDPVFGCVGDISLLQWKMVQLQEDLANAR 107 7*********************************************************************************************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence
MKGTRSSSSP CAACKFLKRR CTPDCTFAPY FRSDEPQKFA NVHKVFGASN VTKILNEVPL 60 ELRRDAVDSL AYEAEARLRD PVFGCVGDIS LLQWKMVQLQ EDLANARVRL ARYVNAPSSS 120 SQSMTSTSSC DRFFHDWTAF ATQLDMPVTN ELGSSSTSMN NVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-50	LBD family protein