PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR78919.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 545aa    MW: 62049.5 Da    PI: 4.8718
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR78919.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS128.39e-401785453374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 +lL +  ea+  ++ el + +L+r+++ + p g +m+Rl +y+ +  +++ ++          ++e++    ++  +a+++f++++P+ +f+h+ aN a
  RWR78919.1 178 HLLKAYGEAIGMESIELGEVILQRIRNKVGPVGATMKRLGHYLSQCDNHQ-ND--------YLVQEAR----KNYEKAFRAFYDICPYGRFAHFRANMA 263
                 788888999999******************************98763333.33........2333333....445568999****************** PP

        GRAS 102 Ileavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 Ilea+ ++ ++vHiiDfd+++G+QWp+Ll+aL        ++R+T + + e +      + + t++rL+++A++ g++++++ +   ++e+l +e+ r+
  RWR78919.1 264 ILEAIPEDvQTVHIIDFDMGEGVQWPPLLEALGR----HRMVRLTSLIQREDQvnnPLLQFKVTKRRLSDYARSQGLSLKIEEM---DMEKLLIEKRRM 355
                 *****9998***********************86....479*****98877767667778889*******************97...788888888888 PP

        GRAS 197 kp....gEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPk.....vvvvveqe....adh.nsesFlerflealeyysalfdsleaklp 276
                 k+    +E +a n++++l ++  ++   +      + +e+L++ ++ s++     v+++        ++  +++ F   f ++l +  alf+s+e  +p
  RWR78919.1 356 KKrgggKEWMAFNCMVSLPHMQMQRSRKDAwefirAGKELLNVSNTCSSTprhkgVITFGCGGdgvqLKKgGDGGFGFFFDRCLLHLHALFESVEWHFP 454
                 888899**********99999855544444444446677777766665433344456654322233333346679999999*************99999 PP

        GRAS 277 res.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaW 373
                 ++   +r+ +E  ++++ ++  vac  ++ +e h        +     ++  +ls ++ ++ak ++r  +  + r++ e ++++vl W++ pLv vS W
  RWR78919.1 455 PQLsLARTAMECLFVEPYVS-SVACFSKW-EESHG-------MHLGEELEGWRLSRENFEEAKEMVRGENLYEVRIDgEMENEMVLAWRGTPLVRVSIW 544
                 87637888888776666555.56666665.24444.......333467999*****************996667777778******************* PP

        GRAS 374 r 374
                 +
  RWR78919.1 545 K 545
                 8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    
MFNPQFIQPT WLEYNLMHPY PNEANPHGLD LDMVANMGNL EFSSSLTTTE DYSDISSSIP  60
YFPAIYPEEL PFNSMSMTVY SGGAHVVSPI EDYSMGLDEL AHVSNDELFN CGIDDVCGWI  120
GENWEDIPLP THSISEEEST ISSMKSGDVS FGEIAALQPK VIGDEQGTDA DNEVRILHLL  180
KAYGEAIGME SIELGEVILQ RIRNKVGPVG ATMKRLGHYL SQCDNHQNDY LVQEARKNYE  240
KAFRAFYDIC PYGRFAHFRA NMAILEAIPE DVQTVHIIDF DMGEGVQWPP LLEALGRHRM  300
VRLTSLIQRE DQVNNPLLQF KVTKRRLSDY ARSQGLSLKI EEMDMEKLLI EKRRMKKRGG  360
GKEWMAFNCM VSLPHMQMQR SRKDAWEFIR AGKELLNVSN TCSSTPRHKG VITFGCGGDG  420
VQLKKGGDGG FGFFFDRCLL HLHALFESVE WHFPPQLSLA RTAMECLFVE PYVSSVACFS  480
KWEESHGMHL GEELEGWRLS RENFEEAKEM VRGENLYEVR IDGEMENEMV LAWRGTPLVR  540
VSIWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.15e-20GRAS family protein