PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR79054.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

Trihelix

Protein Properties

Length: 459aa MW: 51495.3 Da PI: 6.1386

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR79054.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.4	9.4e-24	108	214	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 +Wt+++v++Li ++ +++++ + ++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ RWR79054.1 108 KWTDNMVRLLIMMVYYVGDDAGGAAdadssgkkkggaaggsggmlQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVEN 206 7*************99888885444556777889999999999********************************************559* PP trihelix 79 cpyfdqle 86 ++++ ++ RWR79054.1 207 QALLETMD 214 *99998 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MEPNGMLPTL ASGILGLEMS LHQHPQQQQQ HQHQHHQQMV SFAKQQQQQQ QQSSYGYGTS 60 KTKQQQGTPL SDEDEQGLAE DRGSGGGGGG DSHSGGGKCV GSPWQRMKWT DNMVRLLIMM 120 VYYVGDDAGG AADADSSGKK KGGAAGGSGG MLQKKGKWKS VSRAMMEKGF YVSPQQCEDK 180 FNDLNKRYKR VNDILGKGTA CRVVENQALL ETMDHISSKM KEEVRKLLNS KHLFFREMCA 240 YHSSGAGAAA AVAGAPHPDM DSLPQHQQRC LHSVDNSAVG RRERMREEEE GKEIEEDDDE 300 EDDYDEDDDD EDEEIEGGGI EQRNGHGDEK GLQFTAMSSS SKRQRSSPPS VVQQLGVEVM 360 GVLGDGTKSQ WEQRQWLRSQ VVLLEEKRVG YQRKALELEK QRFKWLKFSG KKEREMEKMK 420 LENERSKLEN ERMVLLLRQK ELELDMNHAK RSDLSSCNG

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MEPNGMLPTL ASGILGLEMS LHQHPQQQQQ HQHQHHQQMV SFAKQQQQQQ QQSSYGYGTS  60
KTKQQQGTPL SDEDEQGLAE DRGSGGGGGG DSHSGGGKCV GSPWQRMKWT DNMVRLLIMM  120
VYYVGDDAGG AADADSSGKK KGGAAGGSGG MLQKKGKWKS VSRAMMEKGF YVSPQQCEDK  180
FNDLNKRYKR VNDILGKGTA CRVVENQALL ETMDHISSKM KEEVRKLLNS KHLFFREMCA  240
YHSSGAGAAA AVAGAPHPDM DSLPQHQQRC LHSVDNSAVG RRERMREEEE GKEIEEDDDE  300
EDDYDEDDDD EDEEIEGGGI EQRNGHGDEK GLQFTAMSSS SKRQRSSPPS VVQQLGVEVM  360
GVLGDGTKSQ WEQRQWLRSQ VVLLEEKRVG YQRKALELEK QRFKWLKFSG KKEREMEKMK  420
LENERSKLEN ERMVLLLRQK ELELDMNHAK RSDLSSCNG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	4e-60	Trihelix family protein